BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= T41612.x
(128 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA66667.1| polyubiquitin [Pinus sylvestris] 66 2e-10
ref|NP_849299.1| polyubiquitin (UBQ10) (SEN3) [Arabidopsis ... 66 2e-10
gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabidopsis ... 66 2e-10
gb|AAR32784.1| polyubiquitin [Clusia minor] 66 2e-10
pir||T51753 polyubiquitin [imported] - Arabidopsis thaliana... 66 2e-10
pir||A25062 ubiquitin precursor - barley (fragment)|gi|7557... 66 2e-10
ref|NP_568397.1| polyubiquitin (UBQ4) [Arabidopsis thaliana... 66 2e-10
ref|NP_983342.1| ACL062Cp [Eremothecium gossypii]|gi|449813... 66 2e-10
ref|NP_595409.1| ubi4-ubiquitin family protein [Schizosacch... 66 2e-10
ref|XP_406137.1| hypothetical protein AN2000.2 [Aspergillus... 66 2e-10
>emb|CAA66667.1| polyubiquitin [Pinus sylvestris]
Length = 761
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 186
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 452 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 490
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 528 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 566
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 604 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 642
Score = 64.7 bits (156), Expect = 5e-10
Identities = 33/39 (84%), Positives = 34/39 (86%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VE+SDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVENSDTIDNVKSKIQDKE 110
Score = 63.5 bits (153), Expect = 1e-09
Identities = 33/39 (84%), Positives = 33/39 (84%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL KTITL VESSDTI NVK KIQ KE
Sbjct: 680 RLRGGMQIFVKTLTAKTITLEVESSDTIDNVKAKIQDKE 718
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34
>ref|NP_849299.1| polyubiquitin (UBQ10) (SEN3) [Arabidopsis
thaliana]|gi|30680061|ref|NP_849301.1| polyubiquitin
(UBQ10) (SEN3) [Arabidopsis
thaliana]|gi|25294251|pir||H85066 polyubiquitin (ubq10)
[imported] - Arabidopsis
thaliana|gi|7267292|emb|CAB81074.1| polyubiquitin
(ubq10) [Arabidopsis thaliana]
Length = 464
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 186
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34
>gb|AAN31845.1| putative polyubiquitin (UBQ10) [Arabidopsis thaliana]
Length = 464
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 186
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 376 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 414
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34
>gb|AAR32784.1| polyubiquitin [Clusia minor]
Length = 223
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 100 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 138
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 24 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 62
Score = 37.4 bits (85), Expect = 0.091
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITL-XVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GK V + + VK KIQ KE
Sbjct: 176 RLRGGMQIFVKTLTGKDHHFWXVRTPIPLIMVKAKIQDKE 215
>pir||T51753 polyubiquitin [imported] - Arabidopsis thaliana
(fragment)|gi|3158372|gb|AAC39466.1| polyubiquitin
[Arabidopsis thaliana]
Length = 137
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 24 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 62
Score = 62.4 bits (150), Expect = 3e-09
Identities = 32/38 (84%), Positives = 33/38 (86%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVK 114
RLRGGMQIFVKTL GKTI+L VESSDTI NVK KIQ K
Sbjct: 100 RLRGGMQIFVKTLTGKTISLEVESSDTIDNVKAKIQDK 137
>pir||A25062 ubiquitin precursor - barley (fragment)|gi|755763|emb|CAA27751.1|
unnamed protein product [Hordeum vulgare subsp. vulgare]
Length = 171
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 90 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 128
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 14 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 52
>ref|NP_568397.1| polyubiquitin (UBQ4) [Arabidopsis thaliana]|gi|70642|pir||UQMUM
polyubiquitin 5 - Arabidopsis
thaliana|gi|17678|emb|CAA31331.1| unnamed protein
product [Arabidopsis thaliana]|gi|987519|gb|AAB53929.1|
polyubiquitin|gi|226499|prf||1515347A poly-ubiquitin
Length = 382
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 110
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 262
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 186
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKE 34
>ref|NP_983342.1| ACL062Cp [Eremothecium gossypii]|gi|44981344|gb|AAS51166.1|
ACL062Cp [Eremothecium gossypii]
Length = 382
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 110
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 262
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 186
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>ref|NP_595409.1| ubi4-ubiquitin family protein [Schizosaccharomyces
pombe]|gi|7493548|pir||T40261 ubi4 protein - fission
yeast (Schizosaccharomyces
pombe)|gi|3738185|emb|CAA21278.1| ubi4
[Schizosaccharomyces pombe]
Length = 382
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 72 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 110
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 224 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 262
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 300 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 338
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 148 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 186
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 34
>ref|XP_406137.1| hypothetical protein AN2000.2 [Aspergillus nidulans FGSC
A4]|gi|40744745|gb|EAA63901.1| hypothetical protein
AN2000.2 [Aspergillus nidulans FGSC A4]
Length = 323
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 90 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKE 128
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 242 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKE 280
Score = 65.9 bits (159), Expect = 2e-10
Identities = 34/39 (87%), Positives = 34/39 (87%)
Frame = +1
Query: 1 RLRGGMQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
RLRGGMQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 166 RLRGGMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKE 204
Score = 55.8 bits (133), Expect = 2e-07
Identities = 29/34 (85%), Positives = 29/34 (85%)
Frame = +1
Query: 16 MQIFVKTLXGKTITLXVESSDTIXNVKXKIQVKE 117
MQIFVKTL GKTITL VESSDTI NVK KIQ KE
Sbjct: 19 MQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKE 52
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.317 0.136 0.343
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 18
effective length of database: 595,597,554
effective search space used: 14294341296
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)