BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AV526883.f
(123 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S42643 ubiquitin / ribosomal protein S27a - potato (fr... 57 1e-07
gb|EAK96371.1| hypothetical protein CaO19.3087 [Candida alb... 57 1e-07
ref|XP_406137.1| hypothetical protein AN2000.2 [Aspergillus... 55 3e-07
gb|AAH69831.1| Unknown (protein for IMAGE:4790152) [Danio r... 55 4e-07
gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thaliana] 55 4e-07
gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus str... 55 4e-07
gb|EAA22902.1| ubiquitin [Plasmodium yoelii yoelii] 55 4e-07
gb|AAB58571.1| predicted to encode 4983 amino acids with a ... 55 4e-07
pir||S34285 polyubiquitin - tomato|gi|312160|emb|CAA51679.1... 55 6e-07
gb|AAK19308.1| polyubiquitin [Tuber borchii] 55 6e-07
>pir||S42643 ubiquitin / ribosomal protein S27a - potato (fragment)
Length = 126
Score = 56.6 bits (135), Expect = 1e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 40 KMQIFVKTLTGKTITLEVESSDTIDNVK 123
KMQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 45 KMQIFVKTLTGKTITLEVESSDTIDNVK 72
>gb|EAK96371.1| hypothetical protein CaO19.3087 [Candida albicans
SC5314]|gi|46437090|gb|EAK96442.1| hypothetical protein
CaO19.10599 [Candida albicans SC5314]
Length = 193
Score = 56.6 bits (135), Expect = 1e-07
Identities = 28/28 (100%), Positives = 28/28 (100%)
Frame = +1
Query: 40 KMQIFVKTLTGKTITLEVESSDTIDNVK 123
KMQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 42 KMQIFVKTLTGKTITLEVESSDTIDNVK 69
>ref|XP_406137.1| hypothetical protein AN2000.2 [Aspergillus nidulans FGSC
A4]|gi|40744745|gb|EAA63901.1| hypothetical protein
AN2000.2 [Aspergillus nidulans FGSC A4]
Length = 323
Score = 55.5 bits (132), Expect = 3e-07
Identities = 29/35 (82%), Positives = 30/35 (84%)
Frame = +1
Query: 19 SILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
S+ V MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 11 SVALVVDIMQIFVKTLTGKTITLEVESSDTIDNVK 45
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 171 MQIFVKTLTGKTITLEVESSDTIDNVK 197
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 247 MQIFVKTLTGKTITLEVESSDTIDNVK 273
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 95 MQIFVKTLTGKTITLEVESSDTIDNVK 121
>gb|AAH69831.1| Unknown (protein for IMAGE:4790152) [Danio rerio]
Length = 624
Score = 55.1 bits (131), Expect = 4e-07
Identities = 26/39 (66%), Positives = 33/39 (83%)
Frame = +1
Query: 7 KNFLSILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
+++ S+ + + MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 3 ESYCSVSTQTLTMQIFVKTLTGKTITLEVEPSDTIENVK 41
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 167 MQIFVKTLTGKTITLEVEPSDTIENVK 193
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 547 MQIFVKTLTGKTITLEVEPSDTIENVK 573
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 319 MQIFVKTLTGKTITLEVEPSDTIENVK 345
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 395 MQIFVKTLTGKTITLEVEPSDTIENVK 421
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 471 MQIFVKTLTGKTITLEVEPSDTIENVK 497
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 243 MQIFVKTLTGKTITLEVEPSDTIENVK 269
Score = 51.2 bits (121), Expect = 6e-06
Identities = 25/27 (92%), Positives = 26/27 (95%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 91 MQIFVKTLTGKTITLEVEPSDTIENVK 117
>gb|AAL09741.1| AT4g05320/C17L7_240 [Arabidopsis thaliana]
Length = 381
Score = 55.1 bits (131), Expect = 4e-07
Identities = 29/34 (85%), Positives = 30/34 (87%)
Frame = +1
Query: 22 ILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
+LS MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 146 VLSLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVK 103
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVK 255
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVK 331
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27
>gb|AAA02769.1| polyprotein [Bovine viral diarrhea virus strain Osloss]
Length = 3975
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +1
Query: 16 LSILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
L L ++KMQIFVKTLTG+TITLEVE SDTI+NVK
Sbjct: 1582 LEHLGWILKMQIFVKTLTGRTITLEVEPSDTIENVK 1617
>gb|EAA22902.1| ubiquitin [Plasmodium yoelii yoelii]
Length = 162
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/37 (72%), Positives = 31/37 (82%)
Frame = +1
Query: 13 FLSILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
F I+ + KMQIFVKTLTGKTITL+VE SDTI+NVK
Sbjct: 26 FFHIIFILTKMQIFVKTLTGKTITLDVEPSDTIENVK 62
>gb|AAB58571.1| predicted to encode 4983 amino acids with a predicted molecular mass
of 558 kDa; ILLC-BVDV ORF [pestivirus type 1]
Length = 4983
Score = 55.1 bits (131), Expect = 4e-07
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +1
Query: 16 LSILSTVIKMQIFVKTLTGKTITLEVESSDTIDNVK 123
L L +++MQIFVKTLTGKTITLEVE SDTI+NVK
Sbjct: 2586 LEHLGWILRMQIFVKTLTGKTITLEVEPSDTIENVK 2621
>pir||S34285 polyubiquitin - tomato|gi|312160|emb|CAA51679.1| ubiquitin
[Lycopersicon esculentum]
Length = 534
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVK 179
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVK 103
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVK 331
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 381 MQIFVKTLTGKTITLEVESSDTIDNVK 407
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 457 MQIFVKTLTGKTITLEVESSDTIDNVK 483
Score = 51.6 bits (122), Expect = 5e-06
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLT KTITLEVESSDTIDNVK
Sbjct: 229 MQIFVKTLTRKTITLEVESSDTIDNVK 255
>gb|AAK19308.1| polyubiquitin [Tuber borchii]
Length = 306
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVK 103
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVK 179
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVK 255
Score = 54.7 bits (130), Expect = 6e-07
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +1
Query: 43 MQIFVKTLTGKTITLEVESSDTIDNVK 123
MQIFVKTLTGKTITLEVESSDTIDNVK
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVK 27
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.315 0.132 0.325
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 16
effective length of database: 599,388,150
effective search space used: 14385315600
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)