BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BE845346.x
(101 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52416 lti30 protein [imported] - Arabidopsis thaliana... 77 1e-13
pir||S52654 cold acclimation protein lti30 - Arabidopsis th... 77 1e-13
gb|AAN60327.1| unknown [Arabidopsis thaliana] 77 1e-13
ref|NP_190666.1| dehydrin xero2 (XERO2) / low-temperature-i... 77 1e-13
pir||KNMUHY dehydrin-like protein - Arabidopsis thaliana|gi... 42 0.005
ref|NP_190667.2| dehydrin, putative [Arabidopsis thaliana]|... 42 0.005
pir||T45729 dehydrin-like protein - Arabidopsis thaliana|gi... 42 0.005
sp|P21298|DHLE_RAPSA LATE EMBRYOGENESIS ABUNDANT PROTEIN (L... 41 0.006
gb|AAQ74768.1| dehydrin [Brassica napus]|gi|37547533|gb|AAN... 41 0.006
emb|CAC20243.1| putative dehydrin [Helianthus annuus] 41 0.008
>pir||T52416 lti30 protein [imported] - Arabidopsis thaliana
(fragment)|gi|509260|emb|CAA54704.1| lti30 [Arabidopsis
thaliana]
Length = 187
Score = 76.6 bits (187), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 54 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 86
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 92 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 124
Score = 57.0 bits (136), Expect = 1e-07
Identities = 21/31 (67%), Positives = 28/31 (89%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ ++LPGHHG+H+TGT T+Y
Sbjct: 131 VHHEKKGIAEKIKDELPGHHGTHKTGTTTSY 161
Score = 37.0 bits (84), Expect = 0.12
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 23 KGMTEKVMEQLPGHHGSHQTG 85
+G+TEK+ME+LPGHHG TG
Sbjct: 7 QGITEKIMEKLPGHHGPTNTG 27
Score = 31.2 bits (69), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 165 GVVHHENKSTMDKIKEKLPGGH 186
>pir||S52654 cold acclimation protein lti30 - Arabidopsis thaliana (fragment)
Length = 187
Score = 76.6 bits (187), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 54 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 86
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 92 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 124
Score = 59.3 bits (142), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ EQLPGHHG+H+TGT T+Y
Sbjct: 131 VHHEKKGIAEKIKEQLPGHHGTHKTGTTTSY 161
Score = 37.0 bits (84), Expect = 0.12
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 23 KGMTEKVMEQLPGHHGSHQTG 85
+G+TEK+ME+LPGHHG TG
Sbjct: 7 QGITEKIMEKLPGHHGPTNTG 27
Score = 31.2 bits (69), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 165 GVVHHENKSTMDKIKEKLPGGH 186
>gb|AAN60327.1| unknown [Arabidopsis thaliana]
Length = 159
Score = 76.6 bits (187), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 60 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 92
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 98 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 130
Score = 47.8 bits (112), Expect = 7e-05
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSH 76
VHHEKKG+ EK+ EQLPGHHG+H
Sbjct: 137 VHHEKKGIAEKIKEQLPGHHGTH 159
Score = 41.2 bits (95), Expect = 0.006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 17 EKKGMTEKVMEQLPGHHGSHQTG 85
+KKG+TEK+ME+LPGHHG TG
Sbjct: 11 QKKGITEKIMEKLPGHHGPTNTG 33
>ref|NP_190666.1| dehydrin xero2 (XERO2) / low-temperature-induced protein LTI30
(LTI30) [Arabidopsis
thaliana]|gi|1169341|sp|P42758|DHX2_ARATH Dehydrin Xero
2 (Low-temperature-induced protein
LTI30)|gi|2129571|pir||S63689 dehydrin-like protein
Xero2/lti30 - Arabidopsis
thaliana|gi|633763|gb|AAB00374.1|
dehydrin|gi|6562249|emb|CAB62619.1| dehydrin Xero2
[Arabidopsis thaliana]|gi|15809984|gb|AAL06919.1|
AT3g50970/F24M12_10 [Arabidopsis
thaliana]|gi|22135759|gb|AAM91036.1| AT3g50970/F24M12_10
[Arabidopsis thaliana]
Length = 193
Score = 76.6 bits (187), Expect = 1e-13
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY
Sbjct: 60 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 92
Score = 69.3 bits (168), Expect = 2e-11
Identities = 29/33 (87%), Positives = 31/33 (93%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
GGVHHEKK +TEKVME+LPGHHGSHQTGTNT Y
Sbjct: 98 GGVHHEKKSVTEKVMEKLPGHHGSHQTGTNTAY 130
Score = 59.3 bits (142), Expect = 2e-08
Identities = 23/31 (74%), Positives = 28/31 (90%)
Frame = +2
Query: 8 VHHEKKGMTEKVMEQLPGHHGSHQTGTNTTY 100
VHHEKKG+ EK+ EQLPGHHG+H+TGT T+Y
Sbjct: 137 VHHEKKGIAEKIKEQLPGHHGTHKTGTTTSY 167
Score = 41.2 bits (95), Expect = 0.006
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +2
Query: 17 EKKGMTEKVMEQLPGHHGSHQTG 85
+KKG+TEK+ME+LPGHHG TG
Sbjct: 11 QKKGITEKIMEKLPGHHGPTNTG 33
Score = 31.2 bits (69), Expect = 6.7
Identities = 12/22 (54%), Positives = 15/22 (67%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHE K +K+ E+LPG H
Sbjct: 171 GVVHHENKSTMDKIKEKLPGGH 192
>pir||KNMUHY dehydrin-like protein - Arabidopsis
thaliana|gi|17684|emb|CAA45524.1| dehydrin [Arabidopsis
thaliana]
Length = 127
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQT---GTNTT 97
GG +KKG+TEK+ E+LPGHH S++T G+ TT
Sbjct: 66 GGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTT 100
Score = 39.3 bits (90), Expect = 0.025
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHEKKGM EK+ E+LPG H
Sbjct: 105 GTVHHEKKGMMEKIKEKLPGGH 126
>ref|NP_190667.2| dehydrin, putative [Arabidopsis
thaliana]|gi|1169340|sp|P25863|DHX1_ARATH Dehydrin Xero
1|gi|633765|gb|AAB00375.1| dehydrin
Length = 128
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQT---GTNTT 97
GG +KKG+TEK+ E+LPGHH S++T G+ TT
Sbjct: 67 GGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTT 101
Score = 39.3 bits (90), Expect = 0.025
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHEKKGM EK+ E+LPG H
Sbjct: 106 GTVHHEKKGMMEKIKEKLPGGH 127
>pir||T45729 dehydrin-like protein - Arabidopsis
thaliana|gi|6562250|emb|CAB62620.1| dehydrin-like
protein [Arabidopsis thaliana]
Length = 127
Score = 41.6 bits (96), Expect = 0.005
Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 3/35 (8%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHHGSHQT---GTNTT 97
GG +KKG+TEK+ E+LPGHH S++T G+ TT
Sbjct: 66 GGRRRKKKGITEKIKEKLPGHHDSNKTSSLGSTTT 100
Score = 39.3 bits (90), Expect = 0.025
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
G VHHEKKGM EK+ E+LPG H
Sbjct: 105 GTVHHEKKGMMEKIKEKLPGGH 126
>sp|P21298|DHLE_RAPSA LATE EMBRYOGENESIS ABUNDANT PROTEIN (LEA
PROTEIN)|gi|99846|pir||S12095 embryonic abundant protein
(clone RSLEA2) - radish|gi|21120|emb|CAA39727.1| unnamed
protein product [Raphanus sativus]
Length = 184
Score = 41.2 bits (95), Expect = 0.006
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 11 HHEKKGMTEKVMEQLPGHHGSH 76
HHEKKG+ EK+ E+LPGHH H
Sbjct: 162 HHEKKGILEKIKEKLPGHHNHH 183
>gb|AAQ74768.1| dehydrin [Brassica napus]|gi|37547533|gb|AAN08718.1| dehydrin
[Brassica juncea]|gi|37547535|gb|AAN08719.1| dehydrin
[Brassica juncea]
Length = 183
Score = 41.2 bits (95), Expect = 0.006
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +2
Query: 11 HHEKKGMTEKVMEQLPGHHGSH 76
HHEKKG+ EK+ E+LPGHH H
Sbjct: 161 HHEKKGILEKIKEKLPGHHNHH 182
>emb|CAC20243.1| putative dehydrin [Helianthus annuus]
Length = 253
Score = 40.8 bits (94), Expect = 0.008
Identities = 16/22 (72%), Positives = 18/22 (81%)
Frame = +2
Query: 2 GGVHHEKKGMTEKVMEQLPGHH 67
GG HEKKGM EK+ E+LPGHH
Sbjct: 232 GGAAHEKKGMMEKIKEKLPGHH 253
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.313 0.127 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 9
effective length of database: 612,655,236
effective search space used: 14703725664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)