BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.9.C1
(1901 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA... 3764 0.0
At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putati... 111 2e-23
At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putati... 105 1e-21
At1g04210.1 68414.m00411 leucine-rich repeat family protein... 80 8e-14
At4g34510.1 68417.m04905 fatty acid elongase, putative simi... 74 5e-12
>At1g01120.1 68414.m00015 fatty acid elongase 3-ketoacyl-CoA synthase 1 (KCS1)
nearly identical to GB:AAC99312 GI:4091810 from
[Arabidopsis thaliana]
Length = 1899
Score = 3764 bits (1899), Expect = 0.0
Identities = 1899/1899 (100%)
Strand = Plus / Plus
Query: 2 gcactctatatatctctccatccctacttgccctcatttcaccaaaatcctcctaattca 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcactctatatatctctccatccctacttgccctcatttcaccaaaatcctcctaattca 60
Query: 62 ccaattttagaattcccattctcattttctctctctttctatttctccaaatttgcctaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccaattttagaattcccattctcattttctctctctttctatttctccaaatttgcctaa 120
Query: 122 agattttacattttatcttcaatccttccttgatttacgtttgaaatatttcgacccaaa 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agattttacattttatcttcaatccttccttgatttacgtttgaaatatttcgacccaaa 180
Query: 182 actatactgatggagagaacaaacagcattgagatggatcgagagagattaacggcggag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actatactgatggagagaacaaacagcattgagatggatcgagagagattaacggcggag 240
Query: 242 atggcgtttcgagattcatcatcggccgttataagaattcgaagacgtttgccggattta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atggcgtttcgagattcatcatcggccgttataagaattcgaagacgtttgccggattta 300
Query: 302 ttaacgtccgttaagctcaaatacgtgaagcttggacttcacaactcttgcaacgtgacc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttaacgtccgttaagctcaaatacgtgaagcttggacttcacaactcttgcaacgtgacc 360
Query: 362 accattctcttcttcttaattattcttcctttaaccggaaccgtgctggttcagctaacc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 accattctcttcttcttaattattcttcctttaaccggaaccgtgctggttcagctaacc 420
Query: 422 ggtctaacgttcgatacgttctctgagctttggtctaaccaggcggttcaactcgacacg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ggtctaacgttcgatacgttctctgagctttggtctaaccaggcggttcaactcgacacg 480
Query: 482 gcgacgagacttacctgcttggttttcctctccttcgttttgaccctctacgtggctaac 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 gcgacgagacttacctgcttggttttcctctccttcgttttgaccctctacgtggctaac 540
Query: 542 cggtctaaaccggtttacctagtggatttctcctgctacaaaccggaagacgagcgtaaa 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cggtctaaaccggtttacctagtggatttctcctgctacaaaccggaagacgagcgtaaa 600
Query: 602 atatcagtagattcgttcttgacgatgactgaggaaaatggatcattcaccgatgacacg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 atatcagtagattcgttcttgacgatgactgaggaaaatggatcattcaccgatgacacg 660
Query: 662 gttcagttccagcaaagaatctcgaaccgggccggtttgggagacgagacgtatctgcca 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gttcagttccagcaaagaatctcgaaccgggccggtttgggagacgagacgtatctgcca 720
Query: 722 cgtggcataacttcaacgcccccgaagctaaatatgtcagaggcacgtgccgaagctgaa 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cgtggcataacttcaacgcccccgaagctaaatatgtcagaggcacgtgccgaagctgaa 780
Query: 782 gccgttatgtttggagccttagattccctcttcgagaaaaccggaattaaaccggccgaa 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gccgttatgtttggagccttagattccctcttcgagaaaaccggaattaaaccggccgaa 840
Query: 842 gtcggaatcttgatagtaaactgcagcttattcaatccgacgccgtctctatcagcgatg 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtcggaatcttgatagtaaactgcagcttattcaatccgacgccgtctctatcagcgatg 900
Query: 902 atcgtgaaccattacaagatgagagaagacatcaaaagttacaacctcggaggaatgggt 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 atcgtgaaccattacaagatgagagaagacatcaaaagttacaacctcggaggaatgggt 960
Query: 962 tgctccgccggattaatctcaatcgatctcgctaacaatctcctcaaagcaaaccctaat 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tgctccgccggattaatctcaatcgatctcgctaacaatctcctcaaagcaaaccctaat 1020
Query: 1022 tcttacgctgtcgtggtaagcacggaaaacataaccctaaactggtacttcggaaatgac 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tcttacgctgtcgtggtaagcacggaaaacataaccctaaactggtacttcggaaatgac 1080
Query: 1082 cggtcaatgctcctctgcaactgcatcttccgaatgggcggagctgcgattctcctctct 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cggtcaatgctcctctgcaactgcatcttccgaatgggcggagctgcgattctcctctct 1140
Query: 1142 aaccgccgtcaagaccggaagaagtcaaagtactcgctggtcaacgtcgttcgaacacat 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aaccgccgtcaagaccggaagaagtcaaagtactcgctggtcaacgtcgttcgaacacat 1200
Query: 1202 aaaggatcagacgacaagaactacaattgcgtgtaccagaaggaagacgagagaggaaca 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aaaggatcagacgacaagaactacaattgcgtgtaccagaaggaagacgagagaggaaca 1260
Query: 1262 atcggtgtctctttagctagagagctcatgtctgtcgccggagacgctctgaaaacaaac 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 atcggtgtctctttagctagagagctcatgtctgtcgccggagacgctctgaaaacaaac 1320
Query: 1322 atcacgactttaggaccgatggttcttccattgtcagagcagttgatgttcttgatttcc 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 atcacgactttaggaccgatggttcttccattgtcagagcagttgatgttcttgatttcc 1380
Query: 1382 ttggtcaaaaggaagatgttcaagttaaaagttaaaccgtatattccggatttcaagcta 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttggtcaaaaggaagatgttcaagttaaaagttaaaccgtatattccggatttcaagcta 1440
Query: 1442 gctttcgagcatttctgtattcacgcaggaggtagagcggttctagacgaagtgcagaag 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gctttcgagcatttctgtattcacgcaggaggtagagcggttctagacgaagtgcagaag 1500
Query: 1502 aatcttgatctcaaagattggcacatggaaccttctagaatgactttgcacagatttggt 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 aatcttgatctcaaagattggcacatggaaccttctagaatgactttgcacagatttggt 1560
Query: 1562 aacacttcgagtagctcgctttggtatgagatggcttataccgaagctaagggtcgggtt 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 aacacttcgagtagctcgctttggtatgagatggcttataccgaagctaagggtcgggtt 1620
Query: 1622 aaagctggtgaccgactttggcagattgcgtttggatcgggtttcaagtgtaatagtgcg 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 aaagctggtgaccgactttggcagattgcgtttggatcgggtttcaagtgtaatagtgcg 1680
Query: 1682 gtttggaaagcgttacgaccggtttcgacggaggagatgaccggtaatgcttgggctggt 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gtttggaaagcgttacgaccggtttcgacggaggagatgaccggtaatgcttgggctggt 1740
Query: 1742 tcgattgatcaatatccggttaaagttgtgcaatgattggttgaaccggataatcatata 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 tcgattgatcaatatccggttaaagttgtgcaatgattggttgaaccggataatcatata 1800
Query: 1802 tgtaattgtgttcttcttgattttattttttaattgttgatgtaagttgtcgattgaaaa 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tgtaattgtgttcttcttgattttattttttaattgttgatgtaagttgtcgattgaaaa 1860
Query: 1862 tcatataatttaattaatttatggatgtgtgtttggtat 1900
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 tcatataatttaattaatttatggatgtgtgtttggtat 1899
>At5g43760.1 68418.m05352 beta-ketoacyl-CoA synthase, putative similar to
beta-ketoacyl-CoA synthase [Simmondsia
chinensis][GI:1045614]
Length = 1841
Score = 111 bits (56), Expect = 2e-23
Identities = 140/168 (83%)
Strand = Plus / Plus
Query: 1424 attccggatttcaagctagctttcgagcatttctgtattcacgcaggaggtagagcggtt 1483
||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct: 1356 attcctgatttcaagctagctttcgagcatttctgtatccacgcgggaggtagagccgtg 1415
Query: 1484 ctagacgaagtgcagaagaatcttgatctcaaagattggcacatggaaccttctagaatg 1543
|| ||||| | ||||||| | ||| | || ||||||||||| || || || |||
Sbjct: 1416 ctcgacgagattgagaagaacttggatttatccgaatggcacatggagccatcgaggatg 1475
Query: 1544 actttgcacagatttggtaacacttcgagtagctcgctttggtatgag 1591
|| ||| || | ||||||||||||||||||||||| ||||||||||||
Sbjct: 1476 acgttgaaccggtttggtaacacttcgagtagctcactttggtatgag 1523
Score = 83.8 bits (42), Expect = 5e-15
Identities = 51/54 (94%)
Strand = Plus / Plus
Query: 1639 ttggcagattgcgtttggatcgggtttcaagtgtaatagtgcggtttggaaagc 1692
|||||||||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct: 1571 ttggcagattgcttttggatcgggttttaagtgtaatagtgcagtttggaaagc 1624
Score = 83.8 bits (42), Expect = 5e-15
Identities = 96/114 (84%)
Strand = Plus / Plus
Query: 1034 gtggtaagcacggaaaacataaccctaaactggtacttcggaaatgaccggtcaatgctc 1093
||||| ||||| || ||||||||||||||||||||||| || || ||||| ||||||||
Sbjct: 951 gtggtgagcacagagaacataaccctaaactggtacttaggcaacgaccgatcaatgctt 1010
Query: 1094 ctctgcaactgcatcttccgaatgggcggagctgcgattctcctctctaaccgc 1147
|| | ||||| |||||||| ||||||||||| ||| | || ||||| ||||||
Sbjct: 1011 ctatctaactgtatcttccgtatgggcggagccgcggtacttctctcgaaccgc 1064
>At1g04220.1 68414.m00412 beta-ketoacyl-CoA synthase, putative Strong similarity
to beta-keto-Coa synthase gb|U37088 from Simmondsia
chinensis, GI:4091810
Length = 2123
Score = 105 bits (53), Expect = 1e-21
Identities = 146/177 (82%)
Strand = Plus / Plus
Query: 1415 aaaccgtatattccggatttcaagctagctttcgagcatttctgtattcacgcaggaggt 1474
||||| |||||||| ||||||||||||||||||||||| ||||| || ||||| |||||
Sbjct: 1226 aaaccttatattcctgatttcaagctagctttcgagcacttctgcatccacgcgggaggc 1285
Query: 1475 agagcggttctagacgaagtgcagaagaatcttgatctcaaagattggcacatggaacct 1534
||||| || || || || | |||||||| | ||| | || ||||| |||||||||
Sbjct: 1286 agagcagtgctcgatgagattgagaagaatttggatttatctgagtggcatatggaacct 1345
Query: 1535 tctagaatgactttgcacagatttggtaacacttcgagtagctcgctttggtatgag 1591
|| || ||||||||| || | ||||| || |||||||||||||||||||||||||||
Sbjct: 1346 tcgaggatgactttgaaccggtttggaaatacttcgagtagctcgctttggtatgag 1402
Score = 95.6 bits (48), Expect = 1e-18
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 1040 agcacggaaaacataaccctaaactggtacttcggaaatgaccggtcaatgctcctctgc 1099
||||| || |||||||||||||||||||| || || || ||||| |||||||| ||||
Sbjct: 842 agcacagagaacataaccctaaactggtatttaggcaacgaccgatcaatgcttctctca 901
Query: 1100 aactgcatcttccgaatgggcggagctgcgattctcctctctaaccgc 1147
|||||||||||||||||||| || || || |||||||||||||||||
Sbjct: 902 aactgcatcttccgaatgggtggcgccgccgttctcctctctaaccgc 949
Score = 75.8 bits (38), Expect = 1e-12
Identities = 47/50 (94%)
Strand = Plus / Plus
Query: 1639 ttggcagattgcgtttggatcgggtttcaagtgtaatagtgcggtttgga 1688
|||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 1450 ttggcagattgcttttggatccggttttaagtgtaatagtgcggtttgga 1499
>At1g04210.1 68414.m00411 leucine-rich repeat family protein / protein kinase
family protein contains Pfam domains PF00560: Leucine
Rich Repeat and PF00069: Protein kinase domain
Length = 4455
Score = 79.8 bits (40), Expect = 8e-14
Identities = 64/72 (88%)
Strand = Plus / Minus
Query: 1520 tggcacatggaaccttctagaatgactttgcacagatttggtaacacttcgagtagctcg 1579
||||| ||||||||||| || ||||||||| || | ||||| || |||||||||||||||
Sbjct: 4399 tggcatatggaaccttcgaggatgactttgaaccggtttggaaatacttcgagtagctcg 4340
Query: 1580 ctttggtatgag 1591
||||||||||||
Sbjct: 4339 ctttggtatgag 4328
Score = 75.8 bits (38), Expect = 1e-12
Identities = 47/50 (94%)
Strand = Plus / Minus
Query: 1639 ttggcagattgcgtttggatcgggtttcaagtgtaatagtgcggtttgga 1688
|||||||||||| |||||||| ||||| ||||||||||||||||||||||
Sbjct: 4280 ttggcagattgcttttggatccggttttaagtgtaatagtgcggtttgga 4231
>At4g34510.1 68417.m04905 fatty acid elongase, putative similar to fatty acid
elongase 1, Arabidopsis thaliana,gb:U29142 [GI:881615]
Length = 1623
Score = 73.8 bits (37), Expect = 5e-12
Identities = 49/53 (92%)
Strand = Plus / Plus
Query: 1427 ccggatttcaagctagctttcgagcatttctgtattcacgcaggaggtagagc 1479
|||||||||||||| ||||| || ||||||||||||||||| |||||||||||
Sbjct: 1120 ccggatttcaagcttgctttagatcatttctgtattcacgcgggaggtagagc 1172
Score = 58.0 bits (29), Expect = 3e-07
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1535 tctagaatgactttgcacagatttggtaacacttcgagtagctcgctttggtatgagatg 1594
||||||||||||||||| |||||||| |||||||| |||||| | |||||||| ||
Sbjct: 1228 tctagaatgactttgcatagatttggaaacacttcctctagctctatatggtatgaattg 1287
Query: 1595 gcttataccgaagctaa 1611
||||| || ||||||||
Sbjct: 1288 gcttacacggaagctaa 1304
Score = 38.2 bits (19), Expect = 0.27
Identities = 45/51 (88%), Gaps = 2/51 (3%)
Strand = Plus / Plus
Query: 1638 tttggcagattgcgtttgg-atcgggtttcaagtgtaatagtgcggtttgg 1687
||||||||||||| ||||| | ||||||| |||||||| || |||||||||
Sbjct: 1331 tttggcagattgcttttggtagcgggttt-aagtgtaacagcgcggtttgg 1380
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 63,042
Number of Sequences: 29161
Number of extensions: 63042
Number of successful extensions: 1665
Number of sequences better than 10.0: 55
length of query: 1901
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1883
effective length of database: 43,533,334
effective search space: 81973267922
effective search space used: 81973267922
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)