BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.8.C1
(1775 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01110.1 68414.m00014 expressed protein contains Prosite... 2710 0.0
At4g00820.1 68417.m00113 calmodulin-binding protein-related... 333 3e-90
At4g14750.1 68417.m02270 calmodulin-binding family protein ... 66 1e-09
At1g51960.1 68414.m05857 calmodulin-binding family protein ... 56 1e-06
At3g16490.1 68416.m02105 calmodulin-binding family protein ... 54 4e-06
>At1g01110.1 68414.m00014 expressed protein contains Prosite PS00165:
Serine/threonine dehydratases pyridoxal-phosphate
attachment site
Length = 1439
Score = 2710 bits (1367), Expect = 0.0
Identities = 1370/1371 (99%)
Strand = Plus / Plus
Query: 405 ggcaagaagagcattaagagcattaaaagggttagtgaagctacaagcattggtgagggg 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ggcaagaagagcattaagagcattaaaagggttagtgaagctacaagcattggtgagggg 128
Query: 465 acataatgtgagaaagcaagctaaaatgacattaaggtgtatgcaagctctggttcgagt 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acataatgtgagaaagcaagctaaaatgacattaaggtgtatgcaagctctggttcgagt 188
Query: 525 ccagtctcgtgtgcttgaccaacgcaaacgcttgtctcatgacggtagtcgcaaatccgc 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ccagtctcgtgtgcttgaccaacgcaaacgcttgtctcatgacggtagtcgcaaatccgc 248
Query: 585 gttcagtgactctcacgctgtttttgaatctcgctatcttcaagatttgtcagatcgaca 644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gttcagtgactctcacgctgtttttgaatctcgctatcttcaagatttgtcagatcgaca 308
Query: 645 atccatgtcaagagaaggaagcagcgccgcggaagattgggatgaccgaccacacacgat 704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 atccatgtcaagagaaggaagcagcgccgcggaagattgggatgaccgaccacacacgat 368
Query: 705 agacgcagtgaaagtgatgctacaacggagacgggacacagcattgagacatgacaagac 764
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 agacgcagtgaaagtgatgctacaacggagacgggacacagcattgagacatgacaagac 428
Query: 765 taatttgtcacaagctttctctcaaaagatgtggaggacggttggtaaccaatccacgga 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 taatttgtcacaagctttctctcaaaagatgtggaggacggttggtaaccaatccacgga 488
Query: 825 aggacaccacgaggtagaacttgaagaggaaaggccaaaatggcttgaccggtggatggc 884
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aggacaccacgaggtagaacttgaagaggaaaggccaaaatggcttgaccggtggatggc 548
Query: 885 tactagaccgtgggataaacgagctagtagtagagcttcggttgaccaaagggtttcagt 944
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 tactagaccgtgggataaacgagctagtagtagagcttcggttgaccaaagggtttcagt 608
Query: 945 taaaaccgttgaaatcgacacttctcagccttactcaagaacaggagcaggaagcccgag 1004
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 taaaaccgttgaaatcgacacttctcagccttactcaagaacaggagcaggaagcccgag 668
Query: 1005 tcgtggccaaagacctagttccccatcaagaactagccaccattaccaatcccgcaataa 1064
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcgtggccaaagacctagttccccatcaagaactagccaccattaccaatcccgcaataa 728
Query: 1065 tttctcagccactccatctccggctaagtctagaccaatacttattcggtcagctagtcc 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tttctcagccactccatctccggctaagtctagaccaatacttattcggtcagctagtcc 788
Query: 1125 acggtgccagagagacccgagggaagaccgtgaccgagcagcttatagttatacatcaaa 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 acggtgccagagagacccgagggaagaccgtgaccgagcagcttatagttatacatcaaa 848
Query: 1185 cacaccaagcttgagatccaattatagtttcacagctaggagtggatgtagcattagtac 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 849 cacaccaagcttgagatccaattatagtttcacagctaggagtggatgtagcattagtac 908
Query: 1245 cacaatggttaataatgcatcattgttgcctaattacatggcgagtacagagtcagctaa 1304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 909 cacaatggttaataatgcatcattgttgcctaattacatggcgagtacagagtcagctaa 968
Query: 1305 agcgaggatccggtctcatagtgcaccgaggcaacggccctcaactcccgagagggaccg 1364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 969 agcgaggatccggtctcatagtgcaccgaggcaacggccctcaactcccgagagggaccg 1028
Query: 1365 tgcgggtttggtcaagaaacggctctcgtatccggtaccaccgccagcggagtatgagga 1424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 tgcgggtttggtcaagaaacggctctcgtatccggtaccaccgccagcggagtatgagga 1088
Query: 1425 caataatagcttaaggagtccaagctttaagagtgtggctggttcacattttggtggaat 1484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 caataatagcttaaggagtccaagctttaagagtgtggctggttcacattttggtggaat 1148
Query: 1485 gttagagcagcaatcgaattactcttcatgttgcactgagtctaacggtgttgagatctc 1544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 gttagagcagcaatcgaattactcttcatgttgcactgagtctaacggtgttgagatctc 1208
Query: 1545 tccagcttctactagtgactttaggaattggcttagatgattggtggtgatgccaaatca 1604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1209 tccagcttctactagtgactttaggaattggcttagatgattggtggtgatgccaaatca 1268
Query: 1605 actgtcaagatctttcatcatcctccaggaaaagaacgttttaaaattttatattccaga 1664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1269 actgtcaagatctttcatcatcctccaggaaaagaacgttttaaaattttatattccaga 1328
Query: 1665 agaaaacaaacacttttatattgtgtcgttgaggttgatttgtgtttggaagataagttt 1724
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1329 agaaaacaaacacttttatattgtgtcgttgaggttgagttgtgtttggaagataagttt 1388
Query: 1725 attgacctattgatctgtaacttcataagattttgaaacgttagaagattc 1775
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1389 attgacctattgatctgtaacttcataagattttgaaacgttagaagattc 1439
>At4g00820.1 68417.m00113 calmodulin-binding protein-related contains Pfam
profile PF00612: IQ calmodulin-binding motif
Length = 2032
Score = 333 bits (168), Expect = 3e-90
Identities = 318/368 (86%)
Strand = Plus / Plus
Query: 351 cgcaagagaaaattacgctgctgttgtcatccagacttctttcagaggatatttggcaag 410
|||||||||| ||||||| |||||||| ||||| ||| ||||||||| |||||||||||
Sbjct: 568 cgcaagagaagattacgcagctgttgtaatccaaactggtttcagaggctatttggcaag 627
Query: 411 aagagcattaagagcattaaaagggttagtgaagctacaagcattggtgaggggacataa 470
|||||||||||||||||| |||||| |||||||| |||||||| | ||||| || || ||
Sbjct: 628 aagagcattaagagcattgaaagggctagtgaagttacaagcactagtgagaggtcacaa 687
Query: 471 tgtgagaaagcaagctaaaatgacattaaggtgtatgcaagctctggttcgagtccagtc 530
|||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||| ||
Sbjct: 688 tgtgaggaagcaagcaaagatgactttaaggtgtatgcaagctctagttcgagtccaatc 747
Query: 531 tcgtgtgcttgaccaacgcaaacgcttgtctcatgacggtagtcgcaaatccgcgttcag 590
|||||||||||||||||| |||||||||||||| || |||||||||||||| || |||||
Sbjct: 748 tcgtgtgcttgaccaacggaaacgcttgtctcacgatggtagtcgcaaatctgccttcag 807
Query: 591 tgactctcacgctgtttttgaatctcgctatcttcaagatttgtcagatcgacaatccat 650
||| |||| ||| | |||||||| ||||||||||| | ||||| || ||||||
Sbjct: 808 cgacactcaaagtgtgctcgaatctcgttatcttcaagaaatatcagacagaagatccat 867
Query: 651 gtcaagagaaggaagcagcgccgcggaagattgggatgaccgaccacacacgatagacgc 710
||||||||||||||| ||| ||||||||||||||||| |||||||||||||| || |
Sbjct: 868 gtcaagagaaggaagtagcattgcggaagattgggatgatcgaccacacacgattgagga 927
Query: 711 agtgaaag 718
||||||||
Sbjct: 928 agtgaaag 935
Score = 71.9 bits (36), Expect = 2e-11
Identities = 75/88 (85%)
Strand = Plus / Plus
Query: 1270 ttgcctaattacatggcgagtacagagtcagctaaagcgaggatccggtctcatagtgca 1329
||||| || |||||||||| ||| || || ||||| || || ||||||||||| ||||||
Sbjct: 1472 ttgccaaactacatggcgattacggaatctgctaaggctagaatccggtctcagagtgca 1531
Query: 1330 ccgaggcaacggccctcaactcccgaga 1357
|| ||||||||||| ||||| |||||||
Sbjct: 1532 ccaaggcaacggccttcaacacccgaga 1559
Score = 65.9 bits (33), Expect = 1e-09
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 75 tcatagtaatgacgtcgaagaagatgaagaaaagaagagagagaagagacggtggtt 131
|||| ||||||| ||||| ||||||||||| ||||||| |||||||||||| |||||
Sbjct: 277 tcatggtaatgaagtcgacgaagatgaagacaagaagaaagagaagagacgttggtt 333
Score = 65.9 bits (33), Expect = 1e-09
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 1177 acatcaaacacaccaagcttgagatccaattatagtttcacagctaggagtgg 1229
|||||||||||||| ||||||||||| || |||||||||||||| || |||||
Sbjct: 1376 acatcaaacacacctagcttgagatctaactatagtttcacagcaagaagtgg 1428
Score = 63.9 bits (32), Expect = 4e-09
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 19 tcttcttcttggctcaccgctgtaaagcgagctttccgatctccgacgaagaaaga 74
||||||||||||||||| || || || ||||||||||||||||| || ||||||||
Sbjct: 206 tcttcttcttggctcactgccgtgaaacgagctttccgatctcccaccaagaaaga 261
Score = 61.9 bits (31), Expect = 2e-08
Identities = 94/115 (81%)
Strand = Plus / Plus
Query: 1010 gccaaagacctagttccccatcaagaactagccaccattaccaatcccgcaataatttct 1069
||||||| |||||||| |||||||| || ||||||||||||||| | |||| | |
Sbjct: 1224 gccaaaggcctagttcaccatcaaggaccagccaccattaccaacaacacaatttctcat 1283
Query: 1070 cagccactccatctccggctaagtctagaccaatacttattcggtcagctagtcc 1124
|||| || |||||||||||||| |||||||| |||| ||||| || ||||||||
Sbjct: 1284 cagctacaccatctccggctaaatctagaccgatacaaattcgatccgctagtcc 1338
Score = 50.1 bits (25), Expect = 7e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 877 tggatggctactagaccgtgggataaacgagct 909
||||||||| ||| |||||||||||||||||||
Sbjct: 1085 tggatggcttctaaaccgtgggataaacgagct 1117
Score = 42.1 bits (21), Expect = 0.016
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 1495 caatcgaattactcttcatgttgcactgagtct 1527
||||| ||||||||||| ||||| |||||||||
Sbjct: 1694 caatcaaattactcttcttgttgtactgagtct 1726
Score = 34.2 bits (17), Expect = 3.9
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 772 tcacaagctttctctca 788
|||||||||||||||||
Sbjct: 992 tcacaagctttctctca 1008
>At4g14750.1 68417.m02270 calmodulin-binding family protein contains Pfam
profile PF00612: IQ calmodulin-binding motif
Length = 1516
Score = 65.9 bits (33), Expect = 1e-09
Identities = 48/53 (90%)
Strand = Plus / Plus
Query: 401 atttggcaagaagagcattaagagcattaaaagggttagtgaagctacaagca 453
||||||| || | |||||||||||||||||||||||||||||| ||||||||
Sbjct: 421 atttggcgaggaaagcattaagagcattaaaagggttagtgaaattacaagca 473
>At1g51960.1 68414.m05857 calmodulin-binding family protein contains IQ
calmodulin-binding motif, Pfam:PF00612
Length = 1056
Score = 56.0 bits (28), Expect = 1e-06
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 414 agcattaagagcattaaaagggttagtgaagctacaagcattggtgag 461
|||||||||||| || ||||| ||||||||||||||||||| |||||
Sbjct: 351 agcattaagagctttgaaaggtatagtgaagctacaagcattagtgag 398
>At3g16490.1 68416.m02105 calmodulin-binding family protein contains IQ
calmodulin-binding motif, Pfam:PF00612
Length = 1312
Score = 54.0 bits (27), Expect = 4e-06
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 400 tatttggcaagaagagcattaagagcattaaaagggttagtgaagctacaagcattggt 458
|||||||| |||| ||| ||| |||| || ||||| ||||||||||||||||| |||||
Sbjct: 500 tatttggcgagaaaagcgttacgagctttgaaaggtttagtgaagctacaagctttggt 558
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 60,510
Number of Sequences: 29161
Number of extensions: 60510
Number of successful extensions: 1851
Number of sequences better than 10.0: 67
length of query: 1775
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1757
effective length of database: 43,533,334
effective search space: 76488067838
effective search space used: 76488067838
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)