BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.7.C1
(630 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (R... 1174 0.0
At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (R... 1074 0.0
At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (R... 472 e-132
At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (R... 194 6e-49
At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (R... 194 6e-49
>At1g01100.2 68414.m00013 60S acidic ribosomal protein P1 (RPP1A) similar to 60S
ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095 from [Arabidopsis
thaliana]
Length = 598
Score = 1174 bits (592), Expect = 0.0
Identities = 592/592 (100%)
Strand = Plus / Plus
Query: 20 attttgtctctctcgccgccttgcgaaaagcattttcgatcttactcttaggataaaaaa 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 attttgtctctctcgccgccttgcgaaaagcattttcgatcttactcttaggataaaaaa 66
Query: 80 atgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcgaggacgagggt 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 atgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcgaggacgagggt 126
Query: 140 atcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgttagtattgag 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgttagtattgag 186
Query: 200 tcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgactgatctcatc 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgactgatctcatc 246
Query: 260 atgaacgttggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 atgaacgttggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgct 306
Query: 320 ggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatgagccagcagaa 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatgagccagcagaa 366
Query: 380 gagagtgacggagatttgggtttcggtttgtttgactaaacgcagtcacttgtctttctt 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 gagagtgacggagatttgggtttcggtttgtttgactaaacgcagtcacttgtctttctt 426
Query: 440 ctttgtagttggatattggagactatattttgtcgtatgagttattattacttgtttgat 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ctttgtagttggatattggagactatattttgtcgtatgagttattattacttgtttgat 486
Query: 500 ctggctaaaggactattagttggtttatgatgcgtatgttgtataactcaagtttcctag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctggctaaaggactattagttggtttatgatgcgtatgttgtataactcaagtttcctag 546
Query: 560 caaaccaatcggctcgggcttttgttagaattgattttgtttattttctacc 611
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caaaccaatcggctcgggcttttgttagaattgattttgtttattttctacc 598
>At1g01100.1 68414.m00012 60S acidic ribosomal protein P1 (RPP1A) similar to 60S
ACIDIC RIBOSOMAL PROTEIN P1 GB:O23095 from [Arabidopsis
thaliana]
Length = 586
Score = 1074 bits (542), Expect = 0.0
Identities = 542/542 (100%)
Strand = Plus / Plus
Query: 70 ggataaaaaaatgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcga 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45 ggataaaaaaatgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcga 104
Query: 130 ggacgagggtatcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgt 189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 ggacgagggtatcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgt 164
Query: 190 tagtattgagtcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgac 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 tagtattgagtcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgac 224
Query: 250 tgatctcatcatgaacgttggtgctggtggtggaggtggtgctccggttgcagctgctgc 309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tgatctcatcatgaacgttggtgctggtggtggaggtggtgctccggttgcagctgctgc 284
Query: 310 tccagctgctggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatga 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tccagctgctggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatga 344
Query: 370 gccagcagaagagagtgacggagatttgggtttcggtttgtttgactaaacgcagtcact 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 gccagcagaagagagtgacggagatttgggtttcggtttgtttgactaaacgcagtcact 404
Query: 430 tgtctttcttctttgtagttggatattggagactatattttgtcgtatgagttattatta 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgtctttcttctttgtagttggatattggagactatattttgtcgtatgagttattatta 464
Query: 490 cttgtttgatctggctaaaggactattagttggtttatgatgcgtatgttgtataactca 549
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cttgtttgatctggctaaaggactattagttggtttatgatgcgtatgttgtataactca 524
Query: 550 agtttcctagcaaaccaatcggctcgggcttttgttagaattgattttgtttattttcta 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agtttcctagcaaaccaatcggctcgggcttttgttagaattgattttgtttattttcta 584
Query: 610 cc 611
||
Sbjct: 585 cc 586
>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
Length = 675
Score = 472 bits (238), Expect = e-132
Identities = 312/336 (92%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 79 aatgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcgaggacgaggg 138
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 117 aatgtcgacagtgggagagctcgcttgcagctacgctgttatgatcctcgaggatgaggg 176
Query: 139 tatcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgttagtattga 198
||| ||||||||||||||||||||||| || |||||||||||||||||||||| |||||
Sbjct: 177 tattgctatcacggctgacaaaatcgccactttggtgaaagctgctggtgttaccattga 236
Query: 199 gtcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgactgatctcat 258
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 237 gtcatactggccaatgctattcgccaagatggctgagaaacgtaatgtcactgatctcat 296
Query: 259 catgaacgttggtgctggtggtggaggtggtgctccggttgcagctgctgctccagctgc 318
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 297 catgaacgttggtgctggtggtggaggtggtgcgcctgttgcagctgctgctcctgctgc 356
Query: 319 tggcggtgg---tgcggcagctgctcctgctgctgaggagaagaagaaggatgagccagc 375
||||||||| ||| || |||||||||||||| ||||||||||||||||| || |||||
Sbjct: 357 tggcggtggtgctgccgctgctgctcctgctgccgaggagaagaagaaggacgaaccagc 416
Query: 376 agaagagagtgacggagatttgggtttcggtttgtt 411
|||||||||||| |||||||||||||| || |||||
Sbjct: 417 agaagagagtgatggagatttgggttttggcttgtt 452
>At4g00810.2 68417.m00112 60S acidic ribosomal protein P1 (RPP1B) similar to
acidic ribosomal protein p1
Length = 598
Score = 194 bits (98), Expect = 6e-49
Identities = 277/336 (82%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 79 aatgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcgaggacgaggg 138
|||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 29 aatgtcgacagtcggagaacttgcttgcagctacgctgttatgatccttgaagacgaggg 88
Query: 139 tatcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgttagtattga 198
|| || ||||| |||| || || ||||| ||||| ||||| ||||||||| |||||
Sbjct: 89 cattgccatcacttctgataagattgcgactttggtcaaagcggctggtgttgagattga 148
Query: 199 gtcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgactgatctcat 258
||| |||||||||||| |||||||||||||||||||||| | || || || || || ||
Sbjct: 149 gtcttactggccaatgttattcgccaagatggctgagaagagaaatgtcacagaccttat 208
Query: 259 catgaacgttggtgctggtggtgg---aggtggtgctccggttgcagctgctgctccagc 315
|||||| ||||||||||||||||| ||| ||||| || || | ||||| || || ||
Sbjct: 209 catgaatgttggtgctggtggtggtggaggcggtgccccagtgtctgctgccgcacctgc 268
Query: 316 tgctggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatgagccagc 375
||||| || || || || |||||| | ||||| ||||| |||||||||| || || ||
Sbjct: 269 tgctgctggaggagctgctgctgctgcccctgctaaggaggagaagaaggacgaacccgc 328
Query: 376 agaagagagtgacggagatttgggtttcggtttgtt 411
|||||||||||| |||||| | |||||||| |||||
Sbjct: 329 agaagagagtgatggagatcttggtttcggcttgtt 364
>At4g00810.1 68417.m00111 60S acidic ribosomal protein P1 (RPP1B) similar to
acidic ribosomal protein p1
Length = 676
Score = 194 bits (98), Expect = 6e-49
Identities = 277/336 (82%), Gaps = 3/336 (0%)
Strand = Plus / Plus
Query: 79 aatgtcgacagttggagagcttgcttgcagctacgctgttatgatcctcgaggacgaggg 138
|||||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct: 107 aatgtcgacagtcggagaacttgcttgcagctacgctgttatgatccttgaagacgaggg 166
Query: 139 tatcgctatcacggctgacaaaatcgcgaccttggtgaaagctgctggtgttagtattga 198
|| || ||||| |||| || || ||||| ||||| ||||| ||||||||| |||||
Sbjct: 167 cattgccatcacttctgataagattgcgactttggtcaaagcggctggtgttgagattga 226
Query: 199 gtcatactggccaatgctattcgccaagatggctgagaaacgtaacgtgactgatctcat 258
||| |||||||||||| |||||||||||||||||||||| | || || || || || ||
Sbjct: 227 gtcttactggccaatgttattcgccaagatggctgagaagagaaatgtcacagaccttat 286
Query: 259 catgaacgttggtgctggtggtgg---aggtggtgctccggttgcagctgctgctccagc 315
|||||| ||||||||||||||||| ||| ||||| || || | ||||| || || ||
Sbjct: 287 catgaatgttggtgctggtggtggtggaggcggtgccccagtgtctgctgccgcacctgc 346
Query: 316 tgctggcggtggtgcggcagctgctcctgctgctgaggagaagaagaaggatgagccagc 375
||||| || || || || |||||| | ||||| ||||| |||||||||| || || ||
Sbjct: 347 tgctgctggaggagctgctgctgctgcccctgctaaggaggagaagaaggacgaacccgc 406
Query: 376 agaagagagtgacggagatttgggtttcggtttgtt 411
|||||||||||| |||||| | |||||||| |||||
Sbjct: 407 agaagagagtgatggagatcttggtttcggcttgtt 442
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 51,466
Number of Sequences: 29161
Number of extensions: 51466
Number of successful extensions: 10086
Number of sequences better than 10.0: 498
length of query: 630
length of database: 44,058,232
effective HSP length: 17
effective length of query: 613
effective length of database: 43,562,495
effective search space: 26703809435
effective search space used: 26703809435
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)