BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.6.C1
(1621 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 componen... 3207 0.0
At4g35790.3 68417.m05086 phospholipase D delta / PLD delta ... 42 0.015
At4g35790.2 68417.m05085 phospholipase D delta / PLD delta ... 42 0.015
At4g35790.1 68417.m05084 phospholipase D delta / PLD delta ... 42 0.015
At3g22435.1 68416.m02835 XS domain-containing protein conta... 42 0.015
>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha subunit,
chloroplast identical to pyruvate dehydrogenase E1 alpha
subunit GB:AAB86803 GI:2454182 from [Arabidopsis
thaliana]; identical to cDNA pyruvate dehydrogenase E1
alpha subunit mRNA, nuclear gene encoding plastid protein
GI:2454181
Length = 1620
Score = 3207 bits (1618), Expect = 0.0
Identities = 1618/1618 (100%)
Strand = Plus / Plus
Query: 2 gcctctcatctcttgttctctccgcccatctctgctctcttttattttcccagaaagttt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctctcatctcttgttctctccgcccatctctgctctcttttattttcccagaaagttt 60
Query: 62 tttttttttttttccgaattccgttaatctcattggggtttccattgatagcaatggcga 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttttttttttttccgaattccgttaatctcattggggtttccattgatagcaatggcga 120
Query: 122 cggctttcgctcccactaagctcactgccacggttcctctgcatggatcccatgagaatc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cggctttcgctcccactaagctcactgccacggttcctctgcatggatcccatgagaatc 180
Query: 182 gtctcttgctcccgatccgattggctcctccttcttctttcctcggatccacccgttccc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtctcttgctcccgatccgattggctcctccttcttctttcctcggatccacccgttccc 240
Query: 242 tctcccttcgcagactcaatcactccaacgccacccgtcgatctcccgtcgtctctgtcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctcccttcgcagactcaatcactccaacgccacccgtcgatctcccgtcgtctctgtcc 300
Query: 302 aggaagttgtcaaggagaagcaatccaccaataataccagcctgttgataaccaaagagg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aggaagttgtcaaggagaagcaatccaccaataataccagcctgttgataaccaaagagg 360
Query: 362 aaggattggagttgtatgaagatatgatactaggtagatctttcgaagacatgtgtgctc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aaggattggagttgtatgaagatatgatactaggtagatctttcgaagacatgtgtgctc 420
Query: 422 aaatgtattaccgaggcaagatgtttggttttgttcacttgtacaatggccaagaggctg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaatgtattaccgaggcaagatgtttggttttgttcacttgtacaatggccaagaggctg 480
Query: 482 tttctactggctttatcaagctccttaccaagtctgactctgtcgttagtacctaccgtg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttctactggctttatcaagctccttaccaagtctgactctgtcgttagtacctaccgtg 540
Query: 542 accatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatgagcgagctcttcg 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 accatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatgagcgagctcttcg 600
Query: 602 gcaaggttactggatgctgcagaggccaaggtggatccatgcacatgttctccaaagaac 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gcaaggttactggatgctgcagaggccaaggtggatccatgcacatgttctccaaagaac 660
Query: 662 acaacatgcttggtggctttgcttttattggtgaaggcattcctgtcgccactggtgctg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 acaacatgcttggtggctttgcttttattggtgaaggcattcctgtcgccactggtgctg 720
Query: 722 cctttagctccaagtacaggagggaagtcttgaaacaggattgtgatgatgtcactgtcg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cctttagctccaagtacaggagggaagtcttgaaacaggattgtgatgatgtcactgtcg 780
Query: 782 cctttttcggagatggaacttgtaacaacggacagttcttcgagtgtctcaacatggctg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cctttttcggagatggaacttgtaacaacggacagttcttcgagtgtctcaacatggctg 840
Query: 842 ctctctataaactgcctattatctttgttgtcgagaataacttgtgggccattgggatgt 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 ctctctataaactgcctattatctttgttgtcgagaataacttgtgggccattgggatgt 900
Query: 902 ctcacttgagagccacttctgaccccgagatttggaagaaaggtcctgcatttgggatgc 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctcacttgagagccacttctgaccccgagatttggaagaaaggtcctgcatttgggatgc 960
Query: 962 ctggtgttcatgttgacggtatggatgtcttgaaggtcagggaagtcgctaaagaagctg 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 ctggtgttcatgttgacggtatggatgtcttgaaggtcagggaagtcgctaaagaagctg 1020
Query: 1022 tcactagagctagaagaggagaaggtccaaccttggttgaatgtgagacttatagattca 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 tcactagagctagaagaggagaaggtccaaccttggttgaatgtgagacttatagattca 1080
Query: 1082 gaggacactccttggctgatcccgatgagctccgtgatgctgctgagaaagccaaatacg 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaggacactccttggctgatcccgatgagctccgtgatgctgctgagaaagccaaatacg 1140
Query: 1142 cggctagagacccaatcgcagcattgaagaagtatttgatagagaacaagcttgcaaagg 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 cggctagagacccaatcgcagcattgaagaagtatttgatagagaacaagcttgcaaagg 1200
Query: 1202 aagcagagctaaagtcaatagagaaaaagatagacgagttggtggaggaagcggttgagt 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 aagcagagctaaagtcaatagagaaaaagatagacgagttggtggaggaagcggttgagt 1260
Query: 1262 ttgcagacgctagtccacagcccggtcgcagtcagttgctagagaatgtgtttgctgatc 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ttgcagacgctagtccacagcccggtcgcagtcagttgctagagaatgtgtttgctgatc 1320
Query: 1322 caaaaggatttggaattggacctgatggacggtacagatgtgaggaccccaagtttaccg 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 caaaaggatttggaattggacctgatggacggtacagatgtgaggaccccaagtttaccg 1380
Query: 1382 aaggcacagctcaagtctgagaagacaagtttaaccataagctgtctactgtctcttcga 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 aaggcacagctcaagtctgagaagacaagtttaaccataagctgtctactgtctcttcga 1440
Query: 1442 tgtttctatatatcttattaagttaaatgctacagagaatcagtttgaatcatttgcact 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 tgtttctatatatcttattaagttaaatgctacagagaatcagtttgaatcatttgcact 1500
Query: 1502 ttttgctttttgtttggtgttactaaactatcacaaggttcttcttgtagttcgttgggt 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ttttgctttttgtttggtgttactaaactatcacaaggttcttcttgtagttcgttgggt 1560
Query: 1562 tttcattggttaccacttaccagagaattgtatttttttttttaaagataattatttt 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 tttcattggttaccacttaccagagaattgtatttttttttttaaagataattatttt 1618
>At4g35790.3 68417.m05086 phospholipase D delta / PLD delta (PLDDELTA) identical
to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis
thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1|
Length = 3248
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aaagttttttttttttttttc 75
|||||||||||||||||||||
Sbjct: 172 aaagttttttttttttttttc 152
>At4g35790.2 68417.m05085 phospholipase D delta / PLD delta (PLDDELTA) identical
to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis
thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1|
Length = 3109
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aaagttttttttttttttttc 75
|||||||||||||||||||||
Sbjct: 172 aaagttttttttttttttttc 152
>At4g35790.1 68417.m05084 phospholipase D delta / PLD delta (PLDDELTA) identical
to phospholipase D delta SP: Q9C5Y0 from [Arabidopsis
thaliana]; supporting cDNA gi|11761141|dbj|AB031047.1|
Length = 3142
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 55 aaagttttttttttttttttc 75
|||||||||||||||||||||
Sbjct: 172 aaagttttttttttttttttc 152
>At3g22435.1 68416.m02835 XS domain-containing protein contains Pfam profile
PF03468: XS domain
Length = 832
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 gaaagtttttttttttttttt 74
|||||||||||||||||||||
Sbjct: 660 gaaagtttttttttttttttt 680
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,597
Number of Sequences: 29161
Number of extensions: 72597
Number of successful extensions: 4150
Number of sequences better than 10.0: 200
length of query: 1621
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1603
effective length of database: 43,533,334
effective search space: 69783934402
effective search space used: 69783934402
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)