BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY063724.F
(1287 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 componen... 2551 0.0
At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-con... 38 0.18
At4g27060.1 68417.m03891 expressed protein 36 0.71
At4g05190.1 68417.m00781 kinesin-like protein A, putative k... 36 0.71
At4g01560.1 68417.m00202 brix domain-containing protein con... 36 0.71
>At1g01090.1 68414.m00011 pyruvate dehydrogenase E1 component alpha subunit,
chloroplast identical to pyruvate dehydrogenase E1 alpha
subunit GB:AAB86803 GI:2454182 from [Arabidopsis
thaliana]; identical to cDNA pyruvate dehydrogenase E1
alpha subunit mRNA, nuclear gene encoding plastid protein
GI:2454181
Length = 1620
Score = 2551 bits (1287), Expect = 0.0
Identities = 1287/1287 (100%)
Strand = Plus / Plus
Query: 1 atggcgacggctttcgctcccactaagctcactgccacggttcctctgcatggatcccat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 atggcgacggctttcgctcccactaagctcactgccacggttcctctgcatggatcccat 173
Query: 61 gagaatcgtctcttgctcccgatccgattggctcctccttcttctttcctcggatccacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 gagaatcgtctcttgctcccgatccgattggctcctccttcttctttcctcggatccacc 233
Query: 121 cgttccctctcccttcgcagactcaatcactccaacgccacccgtcgatctcccgtcgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cgttccctctcccttcgcagactcaatcactccaacgccacccgtcgatctcccgtcgtc 293
Query: 181 tctgtccaggaagttgtcaaggagaagcaatccaccaataataccagcctgttgataacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tctgtccaggaagttgtcaaggagaagcaatccaccaataataccagcctgttgataacc 353
Query: 241 aaagaggaaggattggagttgtatgaagatatgatactaggtagatctttcgaagacatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aaagaggaaggattggagttgtatgaagatatgatactaggtagatctttcgaagacatg 413
Query: 301 tgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaatggccaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tgtgctcaaatgtattaccgaggcaagatgtttggttttgttcacttgtacaatggccaa 473
Query: 361 gaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgttagtacc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaggctgtttctactggctttatcaagctccttaccaagtctgactctgtcgttagtacc 533
Query: 421 taccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatgagcgag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 taccgtgaccatgtccatgccctcagcaaaggtgtctctgctcgtgctgttatgagcgag 593
Query: 481 ctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatgttctcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ctcttcggcaaggttactggatgctgcagaggccaaggtggatccatgcacatgttctcc 653
Query: 541 aaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtcgccact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aaagaacacaacatgcttggtggctttgcttttattggtgaaggcattcctgtcgccact 713
Query: 601 ggtgctgcctttagctccaagtacaggagggaagtcttgaaacaggattgtgatgatgtc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ggtgctgcctttagctccaagtacaggagggaagtcttgaaacaggattgtgatgatgtc 773
Query: 661 actgtcgcctttttcggagatggaacttgtaacaacggacagttcttcgagtgtctcaac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 actgtcgcctttttcggagatggaacttgtaacaacggacagttcttcgagtgtctcaac 833
Query: 721 atggctgctctctataaactgcctattatctttgttgtcgagaataacttgtgggccatt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 atggctgctctctataaactgcctattatctttgttgtcgagaataacttgtgggccatt 893
Query: 781 gggatgtctcacttgagagccacttctgaccccgagatttggaagaaaggtcctgcattt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894 gggatgtctcacttgagagccacttctgaccccgagatttggaagaaaggtcctgcattt 953
Query: 841 gggatgcctggtgttcatgttgacggtatggatgtcttgaaggtcagggaagtcgctaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954 gggatgcctggtgttcatgttgacggtatggatgtcttgaaggtcagggaagtcgctaaa 1013
Query: 901 gaagctgtcactagagctagaagaggagaaggtccaaccttggttgaatgtgagacttat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 gaagctgtcactagagctagaagaggagaaggtccaaccttggttgaatgtgagacttat 1073
Query: 961 agattcagaggacactccttggctgatcccgatgagctccgtgatgctgctgagaaagcc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1074 agattcagaggacactccttggctgatcccgatgagctccgtgatgctgctgagaaagcc 1133
Query: 1021 aaatacgcggctagagacccaatcgcagcattgaagaagtatttgatagagaacaagctt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1134 aaatacgcggctagagacccaatcgcagcattgaagaagtatttgatagagaacaagctt 1193
Query: 1081 gcaaaggaagcagagctaaagtcaatagagaaaaagatagacgagttggtggaggaagcg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1194 gcaaaggaagcagagctaaagtcaatagagaaaaagatagacgagttggtggaggaagcg 1253
Query: 1141 gttgagtttgcagacgctagtccacagcccggtcgcagtcagttgctagagaatgtgttt 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1254 gttgagtttgcagacgctagtccacagcccggtcgcagtcagttgctagagaatgtgttt 1313
Query: 1201 gctgatccaaaaggatttggaattggacctgatggacggtacagatgtgaggaccccaag 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1314 gctgatccaaaaggatttggaattggacctgatggacggtacagatgtgaggaccccaag 1373
Query: 1261 tttaccgaaggcacagctcaagtctga 1287
|||||||||||||||||||||||||||
Sbjct: 1374 tttaccgaaggcacagctcaagtctga 1400
>At5g64320.1 68418.m08079 pentatricopeptide (PPR) repeat-containing protein
contains Pfam profile PF01535: PPR repeat
Length = 2209
Score = 38.2 bits (19), Expect = 0.18
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1127 tggtggaggaagcggttgagttt 1149
||||||| |||||||||||||||
Sbjct: 1853 tggtggaagaagcggttgagttt 1875
>At4g27060.1 68417.m03891 expressed protein
Length = 2853
Score = 36.2 bits (18), Expect = 0.71
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1108 gagaaaaagatagacgagttgg 1129
||||| ||||||||||||||||
Sbjct: 52 gagaagaagatagacgagttgg 31
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin like protein
A, Arabidopsis thaliana, gb:Q07970
Length = 2573
Score = 36.2 bits (18), Expect = 0.71
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 90 ggctcctccttcttctttcctc 111
||||||||||||||| ||||||
Sbjct: 2 ggctcctccttcttccttcctc 23
>At4g01560.1 68417.m00202 brix domain-containing protein contains Pfam domain,
PF04427: Brix domain
Length = 1309
Score = 36.2 bits (18), Expect = 0.71
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1000 cgtgatgctgctgagaaa 1017
||||||||||||||||||
Sbjct: 264 cgtgatgctgctgagaaa 281
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,130
Number of Sequences: 29161
Number of extensions: 40130
Number of successful extensions: 943
Number of sequences better than 10.0: 24
length of query: 1287
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1269
effective length of database: 43,533,334
effective search space: 55243800846
effective search space used: 55243800846
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)