BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.5.C1
(1321 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloropl... 2531 0.0
At4g37810.1 68417.m05350 expressed protein 50 5e-05
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL... 46 8e-04
At5g20920.2 68418.m02485 eukaryotic translation initiation ... 42 0.012
At5g20920.1 68418.m02484 eukaryotic translation initiation ... 42 0.012
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative /
RNA-binding protein cp33, putative similar to 33 KDA
RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris]
Length = 1306
Score = 2531 bits (1277), Expect = 0.0
Identities = 1302/1307 (99%), Gaps = 3/1307 (0%)
Strand = Plus / Plus
Query: 15 atgtntgaataattttttattttttgatttataactntgggccttttgtttatttcatga 74
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3 atgtttgaataattttttattttttgatttataactttgggccttttgtttatttcatga 62
Query: 75 aaaacaaaacctgctacgcgaaagagagtgtctcatctgacgtagcgaataccgagcagg 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 aaaacaaaacctgctacgcgaaagagagtgtctcatctgacgtagcgaataccgagcagg 122
Query: 135 gattgtaacgggttaaatgacccgacccgatttgttctattaatttctatttcatttctt 194
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 -attgtaacgggttaaatgacccgacccgatttgttctattaatttctatttcatttctt 181
Query: 195 ttttttttaatcattcttctcaaataatttactttctggtccttcgataatggcggcctc 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 ttttttttaatcattcttctcaaataatttactttctggtccttcgataatggcggcctc 241
Query: 255 ctgcttcgcaattcccttatcttcttcttctcgatcgtctcacaatgcaattcccaaata 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ctgcttcgcaattcccttatcttcttcttctcgatcgtctcacaatgcaattcccaaata 301
Query: 315 caaaaccctaatctcttcttcttcttactcttacttagaatctctgaaacttcaattctc 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 caaaaccctaatctcttcttcttcttactcttacttagaatctctgaaacttcaattctc 361
Query: 375 ttcttccaattcttttcatcactcttctctttctcgtccctttgtagctcaaccacttca 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 ttcttccaattcttttcatcactcttctctttctcgtccctttgtagctcaaccacttca 421
Query: 435 aatcaaggtctcttcttcagaattatcagttctcgatgaagaaaaagaagaagaagtagt 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 aatcaaggtctcttcttcagaattatcagttctcgatgaagaaaaagaagaagaagtagt 481
Query: 495 taaaggagaagcagaacccaataaagatagtgtcgtctccaaagcagaaccagtaaagaa 554
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 taaaggagaagcagaacccaataaagatagtgtcgtctccaaagcagaaccagtaaagaa 541
Query: 555 accgagaccttgcgagctctacgtgtgtaatatccctagaagctacgacattgctcagct 614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 accgagaccttgcgagctctacgtgtgtaatatccctagaagctacgacattgctcagct 601
Query: 615 tcttgacatgtttcagccttttggaactgtaatctctgtagaggtatcgcgaaatcctca 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tcttgacatgtttcagccttttggaactgtaatctctgtagaggtatcgcgaaatcctca 661
Query: 675 gacgggagagagccgtggaagcgggtacgtgacaatgggttctataaactctgccaaaat 734
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gacgggagagagccgtggaagcgggtacgtgacaatgggttctataaactctgccaaaat 721
Query: 735 cgccattgcttctcttgatggaacagaagtaggtggtcgggaaatgcgggttaggtactc 794
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 cgccattgcttctcttgatggaacagaagtaggtggtcgggaaatgcgggttaggtactc 781
Query: 795 tgttgacatgaatccaggaacaagaagaaaccctgaagtcttgaactcaactccaaagaa 854
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 tgttgacatgaatccaggaacaagaagaaaccctgaagtcttgaactcaactccaaagaa 841
Query: 855 gattctgatgtacgaaagccaacacaaggtctatgtcggaaatctcccttggttcacaca 914
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 gattctgatgtacgaaagccaacacaaggtctatgtcggaaatctcccttggttcacaca 901
Query: 915 gcctgatggtttgagaaaccactttagcaagtttggcacaatcgtaagcacgagagtgtt 974
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 gcctgatggtttgagaaaccactttagcaagtttggcacaatcgtaagcacgagagtgtt 961
Query: 975 acatgatcgtaagaccgggagaaacagagtctttgcctttctttcttttacaagcggtga 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 acatgatcgtaagaccgggagaaacagagtctttgcctttctttcttttacaagcggtga 1021
Query: 1035 agaacgtgatgcggctttatcattcaatggaacacaatatgaaggtcgcagaatcatcgt 1094
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 agaacgtgatgcggctttatcattcaatggaacacaatatgaaggtcgcagaatcatcgt 1081
Query: 1095 cagagaaggtatcgagaagagtgagtcgtaaaccaactgttctgcttttgctgcaaagac 1154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1082 cagagaaggtatcgagaagagtgagtcgtaaaccaactgttctgcttttgctgcaaagac 1141
Query: 1155 atctcttggacacaaacaatgtgtaatgaatgtcttctgatttcttcgacaagtaacctt 1214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1142 atctcttggacacaaacaatgtgtaatgaatgtcttctgatttcttcgacaagtaacctt 1201
Query: 1215 tacatattatatccttctcgattttgtttatcacccattatatctacctgtataattctc 1274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1202 tacatattatatccttctcgattttgtttatcacccattatatctacctgtataattctc 1261
Query: 1275 ttttcggatcttcttcttcggattcatctactctacaaatgaaagat 1321
||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1262 ttttc-gatcttcttcttc-gattcatctactctacaaatgaaagat 1306
>At4g37810.1 68417.m05350 expressed protein
Length = 588
Score = 50.1 bits (25), Expect = 5e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 479 aagaagaagaagtagttaaaggaga 503
|||||||||||||||||||||||||
Sbjct: 280 aagaagaagaagtagttaaaggaga 256
>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) nearly identical to
SP|P35510
Length = 2530
Score = 46.1 bits (23), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 2 tttttttttttanatgtntgaataatttt 30
|||||||||||| |||| |||||||||||
Sbjct: 2341 tttttttttttacatgtctgaataatttt 2369
>At5g20920.2 68418.m02485 eukaryotic translation initiation factor 2 subunit 2,
putative / eIF-2-beta, putative similar to SP|P41035
Eukaryotic translation initiation factor 2 subunit
(eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam
profile PF01873: Domain found in IF2B/IF5
Length = 1151
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 atgaagaaaaagaagaagaag 490
|||||||||||||||||||||
Sbjct: 256 atgaagaaaaagaagaagaag 276
Score = 38.2 bits (19), Expect = 0.18
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 472 gaagaaaaagaagaagaag 490
|||||||||||||||||||
Sbjct: 135 gaagaaaaagaagaagaag 153
>At5g20920.1 68418.m02484 eukaryotic translation initiation factor 2 subunit 2,
putative / eIF-2-beta, putative similar to SP|P41035
Eukaryotic translation initiation factor 2 subunit
(eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam
profile PF01873: Domain found in IF2B/IF5
Length = 1194
Score = 42.1 bits (21), Expect = 0.012
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 470 atgaagaaaaagaagaagaag 490
|||||||||||||||||||||
Sbjct: 299 atgaagaaaaagaagaagaag 319
Score = 38.2 bits (19), Expect = 0.18
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 472 gaagaaaaagaagaagaag 490
|||||||||||||||||||
Sbjct: 178 gaagaaaaagaagaagaag 196
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,801
Number of Sequences: 29161
Number of extensions: 114801
Number of successful extensions: 5563
Number of sequences better than 10.0: 272
length of query: 1321
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1303
effective length of database: 43,533,334
effective search space: 56723934202
effective search space used: 56723934202
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)