BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AY132012.F
(882 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloropl... 1748 0.0
At4g37810.1 68417.m05350 expressed protein 50 3e-05
At5g20920.2 68418.m02485 eukaryotic translation initiation ... 42 0.008
At5g20920.1 68418.m02484 eukaryotic translation initiation ... 42 0.008
At4g22580.1 68417.m03258 exostosin family protein contains ... 42 0.008
>At1g01080.1 68414.m00010 33 kDa ribonucleoprotein, chloroplast, putative /
RNA-binding protein cp33, putative similar to 33 KDA
RIBONUCLEOPROTEIN GB:P19684 from [Nicotiana sylvestris]
Length = 1306
Score = 1748 bits (882), Expect = 0.0
Identities = 882/882 (100%)
Strand = Plus / Plus
Query: 1 atggcggcctcctgcttcgcaattcccttatcttcttcttctcgatcgtctcacaatgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 atggcggcctcctgcttcgcaattcccttatcttcttcttctcgatcgtctcacaatgca 290
Query: 61 attcccaaatacaaaaccctaatctcttcttcttcttactcttacttagaatctctgaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 attcccaaatacaaaaccctaatctcttcttcttcttactcttacttagaatctctgaaa 350
Query: 121 cttcaattctcttcttccaattcttttcatcactcttctctttctcgtccctttgtagct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 cttcaattctcttcttccaattcttttcatcactcttctctttctcgtccctttgtagct 410
Query: 181 caaccacttcaaatcaaggtctcttcttcagaattatcagttctcgatgaagaaaaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 caaccacttcaaatcaaggtctcttcttcagaattatcagttctcgatgaagaaaaagaa 470
Query: 241 gaagaagtagttaaaggagaagcagaacccaataaagatagtgtcgtctccaaagcagaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaagaagtagttaaaggagaagcagaacccaataaagatagtgtcgtctccaaagcagaa 530
Query: 301 ccagtaaagaaaccgagaccttgcgagctctacgtgtgtaatatccctagaagctacgac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ccagtaaagaaaccgagaccttgcgagctctacgtgtgtaatatccctagaagctacgac 590
Query: 361 attgctcagcttcttgacatgtttcagccttttggaactgtaatctctgtagaggtatcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 attgctcagcttcttgacatgtttcagccttttggaactgtaatctctgtagaggtatcg 650
Query: 421 cgaaatcctcagacgggagagagccgtggaagcgggtacgtgacaatgggttctataaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 cgaaatcctcagacgggagagagccgtggaagcgggtacgtgacaatgggttctataaac 710
Query: 481 tctgccaaaatcgccattgcttctcttgatggaacagaagtaggtggtcgggaaatgcgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tctgccaaaatcgccattgcttctcttgatggaacagaagtaggtggtcgggaaatgcgg 770
Query: 541 gttaggtactctgttgacatgaatccaggaacaagaagaaaccctgaagtcttgaactca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 gttaggtactctgttgacatgaatccaggaacaagaagaaaccctgaagtcttgaactca 830
Query: 601 actccaaagaagattctgatgtacgaaagccaacacaaggtctatgtcggaaatctccct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 actccaaagaagattctgatgtacgaaagccaacacaaggtctatgtcggaaatctccct 890
Query: 661 tggttcacacagcctgatggtttgagaaaccactttagcaagtttggcacaatcgtaagc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 tggttcacacagcctgatggtttgagaaaccactttagcaagtttggcacaatcgtaagc 950
Query: 721 acgagagtgttacatgatcgtaagaccgggagaaacagagtctttgcctttctttctttt 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 acgagagtgttacatgatcgtaagaccgggagaaacagagtctttgcctttctttctttt 1010
Query: 781 acaagcggtgaagaacgtgatgcggctttatcattcaatggaacacaatatgaaggtcgc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 acaagcggtgaagaacgtgatgcggctttatcattcaatggaacacaatatgaaggtcgc 1070
Query: 841 agaatcatcgtcagagaaggtatcgagaagagtgagtcgtaa 882
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1071 agaatcatcgtcagagaaggtatcgagaagagtgagtcgtaa 1112
>At4g37810.1 68417.m05350 expressed protein
Length = 588
Score = 50.1 bits (25), Expect = 3e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 236 aagaagaagaagtagttaaaggaga 260
|||||||||||||||||||||||||
Sbjct: 280 aagaagaagaagtagttaaaggaga 256
>At5g20920.2 68418.m02485 eukaryotic translation initiation factor 2 subunit 2,
putative / eIF-2-beta, putative similar to SP|P41035
Eukaryotic translation initiation factor 2 subunit
(eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam
profile PF01873: Domain found in IF2B/IF5
Length = 1151
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 227 atgaagaaaaagaagaagaag 247
|||||||||||||||||||||
Sbjct: 256 atgaagaaaaagaagaagaag 276
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 gaagaaaaagaagaagaag 247
|||||||||||||||||||
Sbjct: 135 gaagaaaaagaagaagaag 153
>At5g20920.1 68418.m02484 eukaryotic translation initiation factor 2 subunit 2,
putative / eIF-2-beta, putative similar to SP|P41035
Eukaryotic translation initiation factor 2 subunit
(eIF-2-beta) {Oryctolagus cuniculus}; contains Pfam
profile PF01873: Domain found in IF2B/IF5
Length = 1194
Score = 42.1 bits (21), Expect = 0.008
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 227 atgaagaaaaagaagaagaag 247
|||||||||||||||||||||
Sbjct: 299 atgaagaaaaagaagaagaag 319
Score = 38.2 bits (19), Expect = 0.12
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 229 gaagaaaaagaagaagaag 247
|||||||||||||||||||
Sbjct: 178 gaagaaaaagaagaagaag 196
>At4g22580.1 68417.m03258 exostosin family protein contains Pfam profile:
PF03016 Exostosin family
Length = 1606
Score = 42.1 bits (21), Expect = 0.008
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 223 ctcgatgaagaaaaagaagaagaag 247
|||||||||||| ||||||||||||
Sbjct: 80 ctcgatgaagaagaagaagaagaag 56
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 79,171
Number of Sequences: 29161
Number of extensions: 79171
Number of successful extensions: 4846
Number of sequences better than 10.0: 538
length of query: 882
length of database: 44,058,232
effective HSP length: 18
effective length of query: 864
effective length of database: 43,533,334
effective search space: 37612800576
effective search space used: 37612800576
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)