BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= T45734.x
(509 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01620.1 68414.m00079 plasma membrane intrinsic protein ... 710 0.0
At4g00430.2 68417.m00060 plasma membrane intrinsic protein,... 293 7e-79
At4g00430.1 68417.m00059 plasma membrane intrinsic protein,... 293 7e-79
At4g23400.1 68417.m03373 major intrinsic family protein / M... 198 3e-50
At2g45960.1 68415.m05714 plasma membrane intrinsic protein ... 190 8e-48
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (PIP1C) /
aquaporin PIP1.3 (PIP1.3) / transmembrane protein B
(TMPB) identical to plasma membrane intrinsic protein 1c
SP:Q08733 from [Arabidopsis thaliana]
Length = 1251
Score = 710 bits (358), Expect = 0.0
Identities = 394/403 (97%), Gaps = 3/403 (0%)
Strand = Plus / Plus
Query: 1 agaaaaaaagcaaagaacacttgaacgttttctagatagagatggaagggaaagaagagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 agaaaaaaagcaaagaacacttgaacgttttctagatagagatggaagggaaagaagagg 145
Query: 61 atgttcgagtgggagctaacaagttcccggagaggcaaccgataggtacatcggctcaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 146 atgttcgagtgggagctaacaagttcccggagaggcaaccgataggtacatcggctcaga 205
Query: 121 cggacaaagactacaaggagccaccaccagctccatttttcgagccaggcgagctgagtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 cggacaaagactacaaggagccaccaccagctccatttttcgagccaggcgagctgagtt 265
Query: 181 cgtggtccttctacagagccggaatcgccgagttcatagccaccttcctgtttctataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cgtggtccttctacagagccggaatcgccgagttcatagccaccttcctgtttctataca 325
Query: 241 taacagtattgacagtgatgggagtnaagagagcaccaaacatgtgtgcctctnttggaa 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 326 taacagtattgacagtgatgggagtgaagagagcaccaaacatgtgtgcctctgttggaa 385
Query: 301 tccaaggcattgcttgggctttcggtggcatgatcctttgcccttgtctactngtactgc 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 386 tccaaggcattgcttgggctttcggtggcatgat-ctttgcccttgtctact-gtactgc 443
Query: 361 tggaatctttggtggggacataaaccccagnggtgccatttgg 403
|||||||| ||||||| ||||||| ||||| |||| |||||||
Sbjct: 444 tggaatctctggtgggcacataaa-cccagcggtgacatttgg 485
>At4g00430.2 68417.m00060 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1367
Score = 293 bits (148), Expect = 7e-79
Identities = 285/328 (86%), Gaps = 5/328 (1%)
Strand = Plus / Plus
Query: 42 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 101
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87 atggaaggcaaagaagaagatgtacgagtgggagctaacaagttcccggagaggcaaccc 146
Query: 102 ataggtacatcggctcag---acggacaaagactacaaggagccaccaccagctccattt 158
|| ||||||||||||||| || ||||| |||||||| |||||||| || || ||| |
Sbjct: 147 atcggtacatcggctcagtccaccgacaaggactacaaagagccacctcctgcgccactg 206
Query: 159 ttcgagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcata 218
|||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| ||
Sbjct: 207 ttcgagcccggcgagctcagctcatggtctttctacagagccggaatagctgagtttatc 266
Query: 219 gccaccttcctgtttctatacataacagtattgacagtgatgggagtnaagagagcacca 278
|| || ||| ||||||| ||||| || || ||||| || |||||||| ||||||||||||
Sbjct: 267 gctactttcttgtttctctacatcactgttttgactgtaatgggagttaagagagcacca 326
Query: 279 aacatgtgtgcctctnttggaatccaaggcattgcttgggctttcggtggcatgatcctt 338
||||||||||| ||| ||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 327 aacatgtgtgcttctgttggaatccaaggtatcgcttgggcttttggtggcatgat-ctt 385
Query: 339 tgcccttgtctactngtactgctggaat 366
||| |||||||||| |||||||||||||
Sbjct: 386 tgctcttgtctact-gtactgctggaat 412
>At4g00430.1 68417.m00059 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1643
Score = 293 bits (148), Expect = 7e-79
Identities = 285/328 (86%), Gaps = 5/328 (1%)
Strand = Plus / Plus
Query: 42 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 101
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87 atggaaggcaaagaagaagatgtacgagtgggagctaacaagttcccggagaggcaaccc 146
Query: 102 ataggtacatcggctcag---acggacaaagactacaaggagccaccaccagctccattt 158
|| ||||||||||||||| || ||||| |||||||| |||||||| || || ||| |
Sbjct: 147 atcggtacatcggctcagtccaccgacaaggactacaaagagccacctcctgcgccactg 206
Query: 159 ttcgagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcata 218
|||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| ||
Sbjct: 207 ttcgagcccggcgagctcagctcatggtctttctacagagccggaatagctgagtttatc 266
Query: 219 gccaccttcctgtttctatacataacagtattgacagtgatgggagtnaagagagcacca 278
|| || ||| ||||||| ||||| || || ||||| || |||||||| ||||||||||||
Sbjct: 267 gctactttcttgtttctctacatcactgttttgactgtaatgggagttaagagagcacca 326
Query: 279 aacatgtgtgcctctnttggaatccaaggcattgcttgggctttcggtggcatgatcctt 338
||||||||||| ||| ||||||||||||| || ||||||||||| ||||||||||| |||
Sbjct: 327 aacatgtgtgcttctgttggaatccaaggtatcgcttgggcttttggtggcatgat-ctt 385
Query: 339 tgcccttgtctactngtactgctggaat 366
||| |||||||||| |||||||||||||
Sbjct: 386 tgctcttgtctact-gtactgctggaat 412
>At4g23400.1 68417.m03373 major intrinsic family protein / MIP family protein
contains Pfam profile: MIP PF00230
Length = 1128
Score = 198 bits (100), Expect = 3e-50
Identities = 252/300 (84%), Gaps = 5/300 (1%)
Strand = Plus / Plus
Query: 72 ggagctaacaagttcccggagaggcaaccgataggtacatcggctcagacgga---caaa 128
||||| ||||||||||| ||||| || ||||| ||||| ||||||||||||| |||
Sbjct: 80 ggagccaacaagttcccagagagacagccgatcggtacggcggctcagacggagagcaag 139
Query: 129 gactacaaggagccaccaccagctccatttttcgagccaggcgagctgagttcgtggtcc 188
||||| ||||| |||||||| || || |||||||| || |||||||| | || |||||
Sbjct: 140 gactataaggaaccaccaccggcgccgtttttcgaacccggcgagctcaaatcttggtct 199
Query: 189 ttctacagagccggaatcgccgagttcatagccaccttcctgtttctatacataacagta 248
||||||||||| || || || |||||||||||||| ||||| || || ||| | || ||
Sbjct: 200 ttctacagagcagggatagctgagttcatagccactttccttttcctctacgtcaccgtt 259
Query: 249 ttgacagtgatgggagtnaagagagcaccaaacatgtgtgcctctnttggaatccaaggc 308
|||||||| ||||| || |||||||| || || |||||||||||| ||||||||||||||
Sbjct: 260 ttgacagtcatgggtgttaagagagctcccaatatgtgtgcctctgttggaatccaaggc 319
Query: 309 attgcttgggctttcggtggcatgatcctttgcccttgtctactngtactgctggaatct 368
|| ||||||||||| ||||||||||| |||||| ||||| |||| |||||||||||||||
Sbjct: 320 atcgcttgggcttttggtggcatgat-ctttgctcttgtttact-gtactgctggaatct 377
>At2g45960.1 68415.m05714 plasma membrane intrinsic protein 1B (PIP1B) /
aquaporin PIP1.2 (PIP1.2) / transmembrane protein A
(TMPA) identical to plasma membrane intrinsic protein 1B
SP:Q06611 from [Arabidopsis thaliana]
Length = 1259
Score = 190 bits (96), Expect = 8e-48
Identities = 247/298 (82%)
Strand = Plus / Plus
Query: 38 agagatggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggca 97
|||||||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||
Sbjct: 136 agagatggaaggtaaagaagaagatgttagagtcggagctaacaagtttccggagaggca 195
Query: 98 accgataggtacatcggctcagacggacaaagactacaaggagccaccaccagctccatt 157
|||||| || || |||||||||| ||||| |||||||| ||||||||||| || || ||
Sbjct: 196 accgatcggaacttcggctcagagtgacaaggactacaaagagccaccacctgcgccgtt 255
Query: 158 tttcgagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcat 217
|||||||| |||||||| ||| |||||||||| ||||| || || || ||||| ||
Sbjct: 256 gttcgagcccggcgagctagcttcatggtccttctggagagctgggattgctgagtttat 315
Query: 218 agccaccttcctgtttctatacataacagtattgacagtgatgggagtnaagagagcacc 277
||| || || |||| || ||||| || || ||||| || ||||| || ||||| ||||
Sbjct: 316 agctacgtttttgttcctgtacatcactgttttgactgttatgggtgtgaagaggtcacc 375
Query: 278 aaacatgtgtgcctctnttggaatccaaggcattgcttgggctttcggtggcatgatc 335
||||||||||| || | ||||||||||| || ||||||||||||||||| ||||||
Sbjct: 376 gaacatgtgtgcttccgtcggaatccaaggtatcgcttgggctttcggtggtatgatc 433
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,385
Number of Sequences: 29161
Number of extensions: 13385
Number of successful extensions: 1095
Number of sequences better than 10.0: 42
length of query: 509
length of database: 44,058,232
effective HSP length: 17
effective length of query: 492
effective length of database: 43,562,495
effective search space: 21432747540
effective search space used: 21432747540
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)