BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= N65332.x
(516 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01620.1 68414.m00079 plasma membrane intrinsic protein ... 555 e-157
At4g00430.2 68417.m00060 plasma membrane intrinsic protein,... 228 4e-59
At4g00430.1 68417.m00059 plasma membrane intrinsic protein,... 228 4e-59
At4g23400.1 68417.m03373 major intrinsic family protein / M... 155 4e-37
At3g61430.1 68416.m06880 plasma membrane intrinsic protein ... 137 1e-31
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (PIP1C) /
aquaporin PIP1.3 (PIP1.3) / transmembrane protein B
(TMPB) identical to plasma membrane intrinsic protein 1c
SP:Q08733 from [Arabidopsis thaliana]
Length = 1251
Score = 555 bits (280), Expect = e-157
Identities = 313/319 (98%), Gaps = 4/319 (1%)
Strand = Plus / Minus
Query: 80 ctcngccgagagtttggtaaggatttggctggaagc-tttgacaactccggcgccgcaga 138
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 616 ctccgccgagagtttggtaaggatttggctggaagcctttgacaactccggcgccgcaga 557
Query: 139 tggctccgagacattgcatcacgatgtaaaagacagctctcgtcaatgacagcttacgag 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 tggctccgagacattgcatcacgatgtaaaagacagctctcgtcaatgacagcttacgag 497
Query: 199 ccaagaacagaccaaatgtcaccgctgggtttatgtgcccaccagagattccagcagtac 258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 ccaagaacagaccaaatgtcaccgctgggtttatgtgcccaccagagattccagcagtac 437
Query: 259 agtagacaagggcaaagatcatgccaccgaaagcccaagcaatgccttggattccaacag 318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 agtagacaagggcaaagatcatgccaccgaaagcccaagcaatgccttggattccaacag 377
Query: 319 aggtacacatgtttggtgctctcttcactccccatcactgtcaatacctgttatgtatag 378
||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 376 aggcacacatgtttggtgctctcttcact-cccatcactgtcaata-ctgttatgtata- 320
Query: 379 gaaacaggaaggtggctat 397
|||||||||||||||||||
Sbjct: 319 gaaacaggaaggtggctat 301
Score = 165 bits (83), Expect = 5e-40
Identities = 85/86 (98%)
Strand = Plus / Plus
Query: 1 cagtcgctcacggctacactaagggctctggtttgggtgctgagataatcggaaccttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 cagtcgctcacggctacactaagggctctggtttgggtgctgagataatcggaaccttcg 685
Query: 61 tccttgtctacacggtcttctcngcc 86
|||||||||||||||||||||| |||
Sbjct: 686 tccttgtctacacggtcttctccgcc 711
>At4g00430.2 68417.m00060 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1367
Score = 228 bits (115), Expect = 4e-59
Identities = 230/267 (86%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 85 ccgagagtttggtaaggatttggctggaagc-tttgacaactccggcgccgcagatggct 143
|||||||| ||||| || |||||||||| | |||||| |||||||| || |||||||||
Sbjct: 574 ccgagagtctggtacggcgttggctggaaacctttgacgactccggcaccacagatggct 515
Query: 144 ccgagacattgcatcacgatgtaaaagacagctctcgtcaatgacagcttacgagccaag 203
|| ||||||||||| | ||||| || || ||||| |||| || | ||| |||||||||
Sbjct: 514 ccaagacattgcataatcatgtagaacactgctctggtcagagataacttccgagccaag 455
Query: 204 aacagaccaaatgtcaccgctgggtttatgtgcccaccagagattccagcagtacagtag 263
|||||||| ||||| || || ||||| ||||| ||||| || ||||||||||||||||||
Sbjct: 454 aacagaccgaatgttacagcagggttgatgtgtccacctgaaattccagcagtacagtag 395
Query: 264 acaagggcaaagatcatgccaccgaaagcccaagcaatgccttggattccaacagaggta 323
||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |
Sbjct: 394 acaagagcaaagatcatgccaccaaaagcccaagcgataccttggattccaacagaagca 335
Query: 324 cacatgtttggtgctctcttcactccc 350
|||||||||||||||||||| ||||||
Sbjct: 334 cacatgtttggtgctctcttaactccc 308
>At4g00430.1 68417.m00059 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1643
Score = 228 bits (115), Expect = 4e-59
Identities = 230/267 (86%), Gaps = 1/267 (0%)
Strand = Plus / Minus
Query: 85 ccgagagtttggtaaggatttggctggaagc-tttgacaactccggcgccgcagatggct 143
|||||||| ||||| || |||||||||| | |||||| |||||||| || |||||||||
Sbjct: 574 ccgagagtctggtacggcgttggctggaaacctttgacgactccggcaccacagatggct 515
Query: 144 ccgagacattgcatcacgatgtaaaagacagctctcgtcaatgacagcttacgagccaag 203
|| ||||||||||| | ||||| || || ||||| |||| || | ||| |||||||||
Sbjct: 514 ccaagacattgcataatcatgtagaacactgctctggtcagagataacttccgagccaag 455
Query: 204 aacagaccaaatgtcaccgctgggtttatgtgcccaccagagattccagcagtacagtag 263
|||||||| ||||| || || ||||| ||||| ||||| || ||||||||||||||||||
Sbjct: 454 aacagaccgaatgttacagcagggttgatgtgtccacctgaaattccagcagtacagtag 395
Query: 264 acaagggcaaagatcatgccaccgaaagcccaagcaatgccttggattccaacagaggta 323
||||| ||||||||||||||||| ||||||||||| || ||||||||||||||||| | |
Sbjct: 394 acaagagcaaagatcatgccaccaaaagcccaagcgataccttggattccaacagaagca 335
Query: 324 cacatgtttggtgctctcttcactccc 350
|||||||||||||||||||| ||||||
Sbjct: 334 cacatgtttggtgctctcttaactccc 308
>At4g23400.1 68417.m03373 major intrinsic family protein / MIP family protein
contains Pfam profile: MIP PF00230
Length = 1128
Score = 155 bits (78), Expect = 4e-37
Identities = 129/146 (88%)
Strand = Plus / Minus
Query: 198 gccaagaacagaccaaatgtcaccgctgggtttatgtgcccaccagagattccagcagta 257
|||||||||| |||||| |||||||| || || || || || || |||||||||||||||
Sbjct: 423 gccaagaacaaaccaaaagtcaccgccggattaatatgtcctcctgagattccagcagta 364
Query: 258 cagtagacaagggcaaagatcatgccaccgaaagcccaagcaatgccttggattccaaca 317
||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 363 cagtaaacaagagcaaagatcatgccaccaaaagcccaagcgatgccttggattccaaca 304
Query: 318 gaggtacacatgtttggtgctctctt 343
|||| |||||| || || ||||||||
Sbjct: 303 gaggcacacatattgggagctctctt 278
>At3g61430.1 68416.m06880 plasma membrane intrinsic protein 1A (PIP1A) /
aquaporin PIP1.1 (PIP1.1) (AQ1) identical to plasma
membrane intrinsic protein 1A SP:P43285 from
[Arabidopsis thaliana]
Length = 1254
Score = 137 bits (69), Expect = 1e-31
Identities = 141/165 (85%)
Strand = Plus / Minus
Query: 186 gacagcttacgagccaagaacagaccaaatgtcaccgctgggtttatgtgcccaccagag 245
|||||||| || || |||||||||||||| || ||||||||||| ||||| ||||| |||
Sbjct: 566 gacagcttccgggctaagaacagaccaaaagtaaccgctgggttgatgtgtccaccggag 507
Query: 246 attccagcagtacagtagacaagggcaaagatcatgccaccgaaagcccaagcaatgcct 305
|| ||||| ||||||||||| | |||||| ||||| ||||||||||||||||| || |||
Sbjct: 506 ataccagcggtacagtagactaaggcaaatatcataccaccgaaagcccaagcgattcct 447
Query: 306 tggattccaacagaggtacacatgtttggtgctctcttcactccc 350
|||||||| || || | ||||||||| |||| || |||||||||
Sbjct: 446 tggattccgacggaagcacacatgttcggtgaccttttcactccc 402
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8666
Number of Sequences: 29161
Number of extensions: 8666
Number of successful extensions: 650
Number of sequences better than 10.0: 26
length of query: 516
length of database: 44,058,232
effective HSP length: 17
effective length of query: 499
effective length of database: 43,562,495
effective search space: 21737685005
effective search space used: 21737685005
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)