BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AF348574.F
(861 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01620.1 68414.m00079 plasma membrane intrinsic protein ... 1707 0.0
At4g00430.1 68417.m00059 plasma membrane intrinsic protein,... 726 0.0
At4g00430.2 68417.m00060 plasma membrane intrinsic protein,... 509 e-143
At2g45960.1 68415.m05714 plasma membrane intrinsic protein ... 490 e-137
At3g61430.1 68416.m06880 plasma membrane intrinsic protein ... 466 e-130
>At1g01620.1 68414.m00079 plasma membrane intrinsic protein 1C (PIP1C) /
aquaporin PIP1.3 (PIP1.3) / transmembrane protein B
(TMPB) identical to plasma membrane intrinsic protein 1c
SP:Q08733 from [Arabidopsis thaliana]
Length = 1251
Score = 1707 bits (861), Expect = 0.0
Identities = 861/861 (100%)
Strand = Plus / Plus
Query: 1 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 186
Query: 61 ataggtacatcggctcagacggacaaagactacaaggagccaccaccagctccatttttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ataggtacatcggctcagacggacaaagactacaaggagccaccaccagctccatttttc 246
Query: 121 gagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcatagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcatagcc 306
Query: 181 accttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcaccaaac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 accttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcaccaaac 366
Query: 241 atgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatctttgcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 atgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatctttgcc 426
Query: 301 cttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacatttggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacatttggt 486
Query: 361 ctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaatgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaatgt 546
Query: 421 ctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaaact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 ctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaaact 606
Query: 481 ctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggtgct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggtgct 666
Query: 541 gagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaagaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaagaga 726
Query: 601 agcgctcgtgactcccacgttccgattttggcaccactcccaatcggattcgctgtgttc 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agcgctcgtgactcccacgttccgattttggcaccactcccaatcggattcgctgtgttc 786
Query: 661 ttggttcacttggcgacgattccaatcaccggaacaggaattaacccagctaggagtctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttggttcacttggcgacgattccaatcaccggaacaggaattaacccagctaggagtctt 846
Query: 721 ggagctgcaatcatctacaacaaggaccacgcttgggacgaccactggatattctgggtc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 ggagctgcaatcatctacaacaaggaccacgcttgggacgaccactggatattctgggtc 906
Query: 781 ggaccattcattggagcagctcttgcggctctttaccaccaacttgtcatcagagccatt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 ggaccattcattggagcagctcttgcggctctttaccaccaacttgtcatcagagccatt 966
Query: 841 ccattcaagtccagatcctga 861
|||||||||||||||||||||
Sbjct: 967 ccattcaagtccagatcctga 987
>At4g00430.1 68417.m00059 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1643
Score = 726 bits (366), Expect = 0.0
Identities = 731/852 (85%), Gaps = 3/852 (0%)
Strand = Plus / Plus
Query: 1 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 60
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87 atggaaggcaaagaagaagatgtacgagtgggagctaacaagttcccggagaggcaaccc 146
Query: 61 ataggtacatcggctcag---acggacaaagactacaaggagccaccaccagctccattt 117
|| ||||||||||||||| || ||||| |||||||| |||||||| || || ||| |
Sbjct: 147 atcggtacatcggctcagtccaccgacaaggactacaaagagccacctcctgcgccactg 206
Query: 118 ttcgagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcata 177
|||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| ||
Sbjct: 207 ttcgagcccggcgagctcagctcatggtctttctacagagccggaatagctgagtttatc 266
Query: 178 gccaccttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcacca 237
|| || ||| ||||||| ||||| || || ||||| || |||||||| ||||||||||||
Sbjct: 267 gctactttcttgtttctctacatcactgttttgactgtaatgggagttaagagagcacca 326
Query: 238 aacatgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatcttt 297
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 327 aacatgtgtgcttctgttggaatccaaggtatcgcttgggcttttggtggcatgatcttt 386
Query: 298 gcccttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacattt 357
|| ||||||||||||||||||||||| || ||||| ||||| ||||| || || |||||
Sbjct: 387 gctcttgtctactgtactgctggaatttcaggtggacacatcaaccctgctgtaacattc 446
Query: 358 ggtctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaa 417
||||||||||||||||| ||| | || |||| ||||| || || ||||| | ||||||
Sbjct: 447 ggtctgttcttggctcggaagttatctctgaccagagcagtgttctacatgattatgcaa 506
Query: 418 tgtctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaa 477
||||| ||||||||||| || |||||||| |||||||| |||||||||| || |||||
Sbjct: 507 tgtcttggagccatctgtggtgccggagtcgtcaaaggtttccagccaacgccgtaccag 566
Query: 478 actctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggt 537
|||||||| || || || ||||| || ||||| |||||||| || || ||||| | |||
Sbjct: 567 actctcggtggtggtgctaacaccgttgctcatggctacaccaaaggttctggccttggt 626
Query: 538 gctgagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaag 597
||||| || |||||||| ||||| || |||||||| |||||||||||||| |||||||||
Sbjct: 627 gctgaaatcatcggaacattcgttctcgtctacactgtcttctccgccaccgacgccaag 686
Query: 598 agaagcgctcgtgactcccacgttccgattttggcaccactcccaatcggattcgctgtg 657
|||||||| |||||||| ||||| ||||||||||| || |||||||||||||| || |||
Sbjct: 687 agaagcgcccgtgactcacacgtcccgattttggcgccgctcccaatcggatttgcagtg 746
Query: 658 ttcttggttcacttggcgacgattccaatcaccggaacaggaattaacccagctaggagt 717
|||||||| |||||||| || || || |||||||| || ||||| ||||||||||| |||
Sbjct: 747 ttcttggtacacttggcaacaataccgatcaccgggaccggaatcaacccagctagaagt 806
Query: 718 cttggagctgcaatcatctacaacaaggaccacgcttgggacgaccactggatattctgg 777
|||||||| ||||| |||||||||||||||||| ||||||| ||||| ||||| ||||||
Sbjct: 807 cttggagccgcaattatctacaacaaggaccactcttgggatgaccattggattttctgg 866
Query: 778 gtcggaccattcattggagcagctcttgcggctctttaccaccaacttgtcatcagagcc 837
|| ||||||||||||||||||||||| || || || || ||||| |||||||||||||
Sbjct: 867 gttggaccattcattggagcagctctagcagcactatatcaccagattgtcatcagagcg 926
Query: 838 attccattcaag 849
||||| ||||||
Sbjct: 927 attcctttcaag 938
>At4g00430.2 68417.m00060 plasma membrane intrinsic protein, putative identical
to transmembrane protein GI:535780 from [Arabidopsis
thaliana]; very strong similarity to SP|Q08733 Plasma
membrane intrinsic protein 1C (Transmembrane protein B)
(TMP-B) {Arabidopsis thaliana}; contains Pfam profile
PF00230: Major intrinsic protein;
Length = 1367
Score = 509 bits (257), Expect = e-143
Identities = 532/623 (85%), Gaps = 3/623 (0%)
Strand = Plus / Plus
Query: 1 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 60
|||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct: 87 atggaaggcaaagaagaagatgtacgagtgggagctaacaagttcccggagaggcaaccc 146
Query: 61 ataggtacatcggctcag---acggacaaagactacaaggagccaccaccagctccattt 117
|| ||||||||||||||| || ||||| |||||||| |||||||| || || ||| |
Sbjct: 147 atcggtacatcggctcagtccaccgacaaggactacaaagagccacctcctgcgccactg 206
Query: 118 ttcgagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcata 177
|||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| ||
Sbjct: 207 ttcgagcccggcgagctcagctcatggtctttctacagagccggaatagctgagtttatc 266
Query: 178 gccaccttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcacca 237
|| || ||| ||||||| ||||| || || ||||| || |||||||| ||||||||||||
Sbjct: 267 gctactttcttgtttctctacatcactgttttgactgtaatgggagttaagagagcacca 326
Query: 238 aacatgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatcttt 297
||||||||||| ||||||||||||||||| || ||||||||||| |||||||||||||||
Sbjct: 327 aacatgtgtgcttctgttggaatccaaggtatcgcttgggcttttggtggcatgatcttt 386
Query: 298 gcccttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacattt 357
|| ||||||||||||||||||||||| || ||||| ||||| ||||| || || |||||
Sbjct: 387 gctcttgtctactgtactgctggaatttcaggtggacacatcaaccctgctgtaacattc 446
Query: 358 ggtctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaa 417
||||||||||||||||| ||| | || |||| ||||| || || ||||| | ||||||
Sbjct: 447 ggtctgttcttggctcggaagttatctctgaccagagcagtgttctacatgattatgcaa 506
Query: 418 tgtctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaa 477
||||| ||||||||||| || |||||||| |||||||| |||||||||| || |||||
Sbjct: 507 tgtcttggagccatctgtggtgccggagtcgtcaaaggtttccagccaacgccgtaccag 566
Query: 478 actctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggt 537
|||||||| || || || ||||| || ||||| |||||||| || || ||||| | |||
Sbjct: 567 actctcggtggtggtgctaacaccgttgctcatggctacaccaaaggttctggccttggt 626
Query: 538 gctgagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaag 597
||||| || |||||||| ||||| || |||||||| |||||||||||||| |||||||||
Sbjct: 627 gctgaaatcatcggaacattcgttctcgtctacactgtcttctccgccaccgacgccaag 686
Query: 598 agaagcgctcgtgactcccacgt 620
|||||||| |||||||| |||||
Sbjct: 687 agaagcgcccgtgactcacacgt 709
Score = 218 bits (110), Expect = 6e-56
Identities = 197/226 (87%)
Strand = Plus / Plus
Query: 624 gattttggcaccactcccaatcggattcgctgtgttcttggttcacttggcgacgattcc 683
||||||||| || |||||||||||||| || ||||||||||| |||||||| || || ||
Sbjct: 841 gattttggcgccgctcccaatcggatttgcagtgttcttggtacacttggcaacaatacc 900
Query: 684 aatcaccggaacaggaattaacccagctaggagtcttggagctgcaatcatctacaacaa 743
|||||||| || ||||| ||||||||||| ||||||||||| ||||| |||||||||||
Sbjct: 901 gatcaccgggaccggaatcaacccagctagaagtcttggagccgcaattatctacaacaa 960
Query: 744 ggaccacgcttgggacgaccactggatattctgggtcggaccattcattggagcagctct 803
||||||| ||||||| ||||| ||||| |||||||| |||||||||||||||||||||||
Sbjct: 961 ggaccactcttgggatgaccattggattttctgggttggaccattcattggagcagctct 1020
Query: 804 tgcggctctttaccaccaacttgtcatcagagccattccattcaag 849
|| || || || ||||| ||||||||||||| ||||| ||||||
Sbjct: 1021 agcagcactatatcaccagattgtcatcagagcgattcctttcaag 1066
>At2g45960.1 68415.m05714 plasma membrane intrinsic protein 1B (PIP1B) /
aquaporin PIP1.2 (PIP1.2) / transmembrane protein A
(TMPA) identical to plasma membrane intrinsic protein 1B
SP:Q06611 from [Arabidopsis thaliana]
Length = 1259
Score = 490 bits (247), Expect = e-137
Identities = 703/855 (82%)
Strand = Plus / Plus
Query: 1 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 60
|||||||| |||||||| |||||| |||| |||||||||||||| |||||||||||||||
Sbjct: 140 atggaaggtaaagaagaagatgttagagtcggagctaacaagtttccggagaggcaaccg 199
Query: 61 ataggtacatcggctcagacggacaaagactacaaggagccaccaccagctccatttttc 120
|| || || |||||||||| ||||| |||||||| ||||||||||| || || || |||
Sbjct: 200 atcggaacttcggctcagagtgacaaggactacaaagagccaccacctgcgccgttgttc 259
Query: 121 gagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcatagcc 180
||||| |||||||| ||| |||||||||| ||||| || || || ||||| |||||
Sbjct: 260 gagcccggcgagctagcttcatggtccttctggagagctgggattgctgagtttatagct 319
Query: 181 accttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcaccaaac 240
|| || |||| || ||||| || || ||||| || ||||| |||||||| |||| |||
Sbjct: 320 acgtttttgttcctgtacatcactgttttgactgttatgggtgtgaagaggtcaccgaac 379
Query: 241 atgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatctttgcc 300
|||||||| || || ||||||||||| || ||||||||||||||||| |||||||| ||
Sbjct: 380 atgtgtgcttccgtcggaatccaaggtatcgcttgggctttcggtggtatgatcttcgct 439
Query: 301 cttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacatttggt 360
|| |||||||| || ||||| ||||| ||||| ||||| ||||||||||| || || |||
Sbjct: 440 ctcgtctactgcaccgctggtatctccggtggacacatcaacccagcggttacgttcggt 499
Query: 361 ctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaatgt 420
||||||| ||| | ||||| || | || ||||||| | ||||| |||||||| ||
Sbjct: 500 ttgttcttagctaggaagctttcgctcacacgagctgtgtactacatagtgatgcagtgc 559
Query: 421 ctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaaact 480
| ||||| ||||| || || || || ||||| || ||||||||||| | ||||| ||
Sbjct: 560 ttaggagctatctgtggagctggtgtggtcaaggggttccagccaaagcaataccaggct 619
Query: 481 ctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggtgct 540
| || || ||||||||||| | ||||| |||||||| || || |||| | || |||
Sbjct: 620 ttgggaggtggagccaacaccatagctcatggctacaccaaaggaagtggtcttggagct 679
Query: 541 gagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaagaga 600
||||| || |||||||| |||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 680 gagattattggaacctttgtccttgtttacaccgtcttctctgccactgatgccaagaga 739
Query: 601 agcgctcgtgactcccacgttccgattttggcaccactcccaatcggattcgctgtgttc 660
| |||||||||||| || ||||| ||| | ||||| ||||| ||||||||||||||||||
Sbjct: 740 aacgctcgtgactctcatgttcctattctagcaccgctccctatcggattcgctgtgttc 799
Query: 661 ttggttcacttggcgacgattccaatcaccggaacaggaattaacccagctaggagtctt 720
||||||||||| || || || || || || ||||| ||||| |||||||| || ||||||
Sbjct: 800 ttggttcacttagcaaccatccccattactggaactggaatcaacccagcaagaagtctt 859
Query: 721 ggagctgcaatcatctacaacaaggaccacgcttgggacgaccactggatattctgggtc 780
|||||||||||||||| |||||||||| |||||||||| ||||||||| | || |||||
Sbjct: 860 ggagctgcaatcatcttcaacaaggacaacgcttgggatgaccactgggtcttttgggtt 919
Query: 781 ggaccattcattggagcagctcttgcggctctttaccaccaacttgtcatcagagccatt 840
|||||||||||||| || || ||||| ||||| |||||| | ||||||||||||||
Sbjct: 920 ggaccattcattggtgctgcacttgctgctctctaccacgttatagtcatcagagccatc 979
Query: 841 ccattcaagtccaga 855
|||||||||||||||
Sbjct: 980 ccattcaagtccaga 994
>At3g61430.1 68416.m06880 plasma membrane intrinsic protein 1A (PIP1A) / aquaporin
PIP1.1 (PIP1.1) (AQ1) identical to plasma membrane
intrinsic protein 1A SP:P43285 from [Arabidopsis
thaliana]
Length = 1254
Score = 466 bits (235), Expect = e-130
Identities = 700/855 (81%)
Strand = Plus / Plus
Query: 1 atggaagggaaagaagaggatgttcgagtgggagctaacaagttcccggagaggcaaccg 60
|||||||| || ||||| || ||| |||| ||||||||||||||||||||||| |||||
Sbjct: 184 atggaaggcaaggaagaagacgttagagttggagctaacaagttcccggagagacaacca 243
Query: 61 ataggtacatcggctcagacggacaaagactacaaggagccaccaccagctccatttttc 120
|| || ||||| ||||||| ||||| ||||||||||| |||||||||||||| ||||||
Sbjct: 244 atcggaacatcagctcagagtgacaaggactacaaggaaccaccaccagctccgtttttc 303
Query: 121 gagccaggcgagctgagttcgtggtccttctacagagccggaatcgccgagttcatagcc 180
|| || || ||||| ||| ||||| || | ||||| || ||||| |||||||| ||
Sbjct: 304 gaacctggtgagctttcttcatggtctttttggagagctgggatcgctgagttcatcgct 363
Query: 181 accttcctgtttctatacataacagtattgacagtgatgggagtgaagagagcaccaaac 240
|| || || ||||| ||||| || || ||||| || ||||||||||| || |||| |||
Sbjct: 364 acttttctctttctctacatcactgtcttgactgttatgggagtgaaaaggtcaccgaac 423
Query: 241 atgtgtgcctctgttggaatccaaggcattgcttgggctttcggtggcatgatctttgcc 300
|||||||| || || ||||||||||| || ||||||||||||||||| ||||| ||||||
Sbjct: 424 atgtgtgcttccgtcggaatccaaggaatcgcttgggctttcggtggtatgatatttgcc 483
Query: 301 cttgtctactgtactgctggaatctctggtgggcacataaacccagcggtgacatttggt 360
| ||||||||||| ||||| ||||| ||||| ||||| ||||||||||| || ||||||
Sbjct: 484 ttagtctactgtaccgctggtatctccggtggacacatcaacccagcggttacttttggt 543
Query: 361 ctgttcttggctcgtaagctgtcattgacgagagctgtcttttacatcgtgatgcaatgt 420
|||||||| || || |||||||| | || |||||| | | ||||| |||||||| ||
Sbjct: 544 ctgttcttagcccggaagctgtcgcttactagagctctgtactacatagtgatgcagtgc 603
Query: 421 ctcggagccatctgcggcgccggagttgtcaaaggcttccagccaaatccttaccaaact 480
| ||||| ||||| || || ||||| || ||||| |||||||| || | ||||| ||
Sbjct: 604 ttgggagctatctgtggtgctggagtggttaaagggttccagcctaagcaataccaggct 663
Query: 481 ctcggcggaggagccaacacagtcgctcacggctacactaagggctctggtttgggtgct 540
|| || |||||||| ||||| || ||||| || ||||| ||||| |||| | || |||
Sbjct: 664 ctaggaggaggagctaacactgtggctcatggttacaccaagggaagtggtcttggagct 723
Query: 541 gagataatcggaaccttcgtccttgtctacacggtcttctccgccactgacgccaagaga 600
||||| || || || ||||| ||||| ||||| |||||||| || |||||||||||||||
Sbjct: 724 gagatcattggcacattcgttcttgtatacacagtcttctcagcaactgacgccaagaga 783
Query: 601 agcgctcgtgactcccacgttccgattttggcaccactcccaatcggattcgctgtgttc 660
| ||||||||||| || || || ||| | ||||||||||||||||| || || || |||
Sbjct: 784 aatgctcgtgactctcatgtccctattcttgcaccactcccaatcgggtttgcggttttc 843
Query: 661 ttggttcacttggcgacgattccaatcaccggaacaggaattaacccagctaggagtctt 720
|||||||||||||| || || |||||||| || ||||| || ||||||||||| || |||
Sbjct: 844 ttggttcacttggcaaccatcccaatcactggcacaggcatcaacccagctagaagcctt 903
Query: 721 ggagctgcaatcatctacaacaaggaccacgcttgggacgaccactggatattctgggtc 780
||||||||||||||||||||||| ||||| | ||||| ||||||||| | || |||||
Sbjct: 904 ggagctgcaatcatctacaacaaagaccattcctgggatgaccactgggtgttttgggtt 963
Query: 781 ggaccattcattggagcagctcttgcggctctttaccaccaacttgtcatcagagccatt 840
|| || ||||||||||| || ||||| ||||||||||| ||||||||||||||||
Sbjct: 964 ggccccttcattggagctgcacttgctgctctttaccatgtggttgtcatcagagccatc 1023
Query: 841 ccattcaagtccaga 855
|| ||||||||||||
Sbjct: 1024 cccttcaagtccaga 1038
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,725
Number of Sequences: 29161
Number of extensions: 20725
Number of successful extensions: 509
Number of sequences better than 10.0: 51
length of query: 861
length of database: 44,058,232
effective HSP length: 17
effective length of query: 844
effective length of database: 43,562,495
effective search space: 36766745780
effective search space used: 36766745780
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)