BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01480.F
(1491 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate ... 2956 0.0
At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate ... 2623 0.0
At3g61510.1 68416.m06889 1-aminocyclopropane-1-carboxylate ... 117 3e-25
At5g28360.1 68418.m03444 1-aminocyclopropane-1-carboxylate ... 107 3e-22
At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate ... 70 6e-11
>At1g01480.1 68414.m00063 1-aminocyclopropane-1-carboxylate synthase 2 / ACC
synthase 2 (ACS2) (ACC1) identical to
1-aminocyclopropane-1-carboxylate synthase SP|Q06402
[GI:166578] from [Arabidopsis thaliana]
Length = 1920
Score = 2956 bits (1491), Expect = 0.0
Identities = 1491/1491 (100%)
Strand = Plus / Plus
Query: 1 atgggtcttccgggaaaaaataaaggtgcagttttgtcgaagatagcgactaacaatcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81 atgggtcttccgggaaaaaataaaggtgcagttttgtcgaagatagcgactaacaatcaa 140
Query: 61 cacggagagaactcagagtactttgatggatggaaagcttacgacaaagatccttttcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 cacggagagaactcagagtactttgatggatggaaagcttacgacaaagatccttttcat 200
Query: 121 ctttcccgtaacccccatgggatcatccaaatgggtcttgcagagaatcagctttgctta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctttcccgtaacccccatgggatcatccaaatgggtcttgcagagaatcagctttgctta 260
Query: 181 gatttgatcaaagattgggtcaaagagaacccagaagcttctatttgcacccttgaaggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttgatcaaagattgggtcaaagagaacccagaagcttctatttgcacccttgaaggt 320
Query: 241 attcatcagtttagcgacatcgctaatttccaagactaccatggtcttaagaagtttaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attcatcagtttagcgacatcgctaatttccaagactaccatggtcttaagaagtttaga 380
Query: 301 caggcaattgcacatttcatgggaaaagctagaggtggaagagtgacttttgatccggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcaattgcacatttcatgggaaaagctagaggtggaagagtgacttttgatccggag 440
Query: 361 agggtggttatgagcggaggagccaccggagccaatgaaacaatcatgttctgccttgcg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agggtggttatgagcggaggagccaccggagccaatgaaacaatcatgttctgccttgcg 500
Query: 421 gatcccggcgacgttttcctcattccctccccgtactatgccgcatttgatagagacttg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gatcccggcgacgttttcctcattccctccccgtactatgccgcatttgatagagacttg 560
Query: 481 aggtggcggacaggtgtcgagataatcccggttccttgttcaagctccgacaatttcaaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aggtggcggacaggtgtcgagataatcccggttccttgttcaagctccgacaatttcaaa 620
Query: 541 ttaaccgttgacgccgcggaatgggcttataaaaaagcccaagagtccaataaaaaagtc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaaccgttgacgccgcggaatgggcttataaaaaagcccaagagtccaataaaaaagtc 680
Query: 601 aaaggtctgattttgaccaacccatcaaatccactcggtacaatgttggataaggacaca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaggtctgattttgaccaacccatcaaatccactcggtacaatgttggataaggacaca 740
Query: 661 ctcacgaacttggtccggtttgtcacgaggaagaacattcacctagtcgtcgacgagatc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctcacgaacttggtccggtttgtcacgaggaagaacattcacctagtcgtcgacgagatc 800
Query: 721 tacgccgccacagtcttcgccggaggagatttcgtgagcgttgctgaggtggtcaatgat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tacgccgccacagtcttcgccggaggagatttcgtgagcgttgctgaggtggtcaatgat 860
Query: 781 gtggacatctccgaagtcaacgttgacttgattcacattgtctatagtctttctaaagat 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gtggacatctccgaagtcaacgttgacttgattcacattgtctatagtctttctaaagat 920
Query: 841 atgggacttcctggttttagagtcgggatagtctattctttcaatgactcggtcgtgtct 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 atgggacttcctggttttagagtcgggatagtctattctttcaatgactcggtcgtgtct 980
Query: 901 tgcgcaagaaaaatgtcaagtttcggacttgtttcgtctcagacacaactcatgcttgct 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 tgcgcaagaaaaatgtcaagtttcggacttgtttcgtctcagacacaactcatgcttgct 1040
Query: 961 tcgatgttgtccgatgatcagtttgtggataattttctaatggaaagctcgagaaggttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1041 tcgatgttgtccgatgatcagtttgtggataattttctaatggaaagctcgagaaggttg 1100
Query: 1021 gggataaggcataaagtttttaccacggggatcaagaaagcagatattgcttgtttgaca 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1101 gggataaggcataaagtttttaccacggggatcaagaaagcagatattgcttgtttgaca 1160
Query: 1081 agcaacgctggtttatttgcgtggatggatttgagacatctactgagagatcgtaactcg 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1161 agcaacgctggtttatttgcgtggatggatttgagacatctactgagagatcgtaactcg 1220
Query: 1141 tttgaatctgagatcgagctttggcatataatcatcgatagagttaagctcaatgtgtct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1221 tttgaatctgagatcgagctttggcatataatcatcgatagagttaagctcaatgtgtct 1280
Query: 1201 cctggctcttccttccgttgcacggaacctggatggtttaggatttgctttgccaacatg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1281 cctggctcttccttccgttgcacggaacctggatggtttaggatttgctttgccaacatg 1340
Query: 1261 gacgatgatactctccatgtggcgcttggacggatccaagatttcgtgtctaagaacaag 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1341 gacgatgatactctccatgtggcgcttggacggatccaagatttcgtgtctaagaacaag 1400
Query: 1321 aacaagatcgtcgagaaagcatctgaaaatgatcaggtaatccagaacaagagtgctaaa 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1401 aacaagatcgtcgagaaagcatctgaaaatgatcaggtaatccagaacaagagtgctaaa 1460
Query: 1381 aagctgaaatggacgcagaccaatcttcgactaagtttccgacgactttacgaggatggt 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 aagctgaaatggacgcagaccaatcttcgactaagtttccgacgactttacgaggatggt 1520
Query: 1441 ctctcgtctccagggataatgtcaccacactcacctcttctccgagcatga 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1521 ctctcgtctccagggataatgtcaccacactcacctcttctccgagcatga 1571
>At1g01480.2 68414.m00064 1-aminocyclopropane-1-carboxylate synthase 2 / ACC
synthase 2 (ACS2) (ACC1) identical to
1-aminocyclopropane-1-carboxylate synthase SP|Q06402
[GI:166578] from [Arabidopsis thaliana]
Length = 1735
Score = 2623 bits (1323), Expect = 0.0
Identities = 1323/1323 (100%)
Strand = Plus / Plus
Query: 169 cagctttgcttagatttgatcaaagattgggtcaaagagaacccagaagcttctatttgc 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 cagctttgcttagatttgatcaaagattgggtcaaagagaacccagaagcttctatttgc 123
Query: 229 acccttgaaggtattcatcagtttagcgacatcgctaatttccaagactaccatggtctt 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 acccttgaaggtattcatcagtttagcgacatcgctaatttccaagactaccatggtctt 183
Query: 289 aagaagtttagacaggcaattgcacatttcatgggaaaagctagaggtggaagagtgact 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 aagaagtttagacaggcaattgcacatttcatgggaaaagctagaggtggaagagtgact 243
Query: 349 tttgatccggagagggtggttatgagcggaggagccaccggagccaatgaaacaatcatg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttgatccggagagggtggttatgagcggaggagccaccggagccaatgaaacaatcatg 303
Query: 409 ttctgccttgcggatcccggcgacgttttcctcattccctccccgtactatgccgcattt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ttctgccttgcggatcccggcgacgttttcctcattccctccccgtactatgccgcattt 363
Query: 469 gatagagacttgaggtggcggacaggtgtcgagataatcccggttccttgttcaagctcc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gatagagacttgaggtggcggacaggtgtcgagataatcccggttccttgttcaagctcc 423
Query: 529 gacaatttcaaattaaccgttgacgccgcggaatgggcttataaaaaagcccaagagtcc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 gacaatttcaaattaaccgttgacgccgcggaatgggcttataaaaaagcccaagagtcc 483
Query: 589 aataaaaaagtcaaaggtctgattttgaccaacccatcaaatccactcggtacaatgttg 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aataaaaaagtcaaaggtctgattttgaccaacccatcaaatccactcggtacaatgttg 543
Query: 649 gataaggacacactcacgaacttggtccggtttgtcacgaggaagaacattcacctagtc 708
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gataaggacacactcacgaacttggtccggtttgtcacgaggaagaacattcacctagtc 603
Query: 709 gtcgacgagatctacgccgccacagtcttcgccggaggagatttcgtgagcgttgctgag 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 gtcgacgagatctacgccgccacagtcttcgccggaggagatttcgtgagcgttgctgag 663
Query: 769 gtggtcaatgatgtggacatctccgaagtcaacgttgacttgattcacattgtctatagt 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtggtcaatgatgtggacatctccgaagtcaacgttgacttgattcacattgtctatagt 723
Query: 829 ctttctaaagatatgggacttcctggttttagagtcgggatagtctattctttcaatgac 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctttctaaagatatgggacttcctggttttagagtcgggatagtctattctttcaatgac 783
Query: 889 tcggtcgtgtcttgcgcaagaaaaatgtcaagtttcggacttgtttcgtctcagacacaa 948
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 tcggtcgtgtcttgcgcaagaaaaatgtcaagtttcggacttgtttcgtctcagacacaa 843
Query: 949 ctcatgcttgcttcgatgttgtccgatgatcagtttgtggataattttctaatggaaagc 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctcatgcttgcttcgatgttgtccgatgatcagtttgtggataattttctaatggaaagc 903
Query: 1009 tcgagaaggttggggataaggcataaagtttttaccacggggatcaagaaagcagatatt 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tcgagaaggttggggataaggcataaagtttttaccacggggatcaagaaagcagatatt 963
Query: 1069 gcttgtttgacaagcaacgctggtttatttgcgtggatggatttgagacatctactgaga 1128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 gcttgtttgacaagcaacgctggtttatttgcgtggatggatttgagacatctactgaga 1023
Query: 1129 gatcgtaactcgtttgaatctgagatcgagctttggcatataatcatcgatagagttaag 1188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 gatcgtaactcgtttgaatctgagatcgagctttggcatataatcatcgatagagttaag 1083
Query: 1189 ctcaatgtgtctcctggctcttccttccgttgcacggaacctggatggtttaggatttgc 1248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 ctcaatgtgtctcctggctcttccttccgttgcacggaacctggatggtttaggatttgc 1143
Query: 1249 tttgccaacatggacgatgatactctccatgtggcgcttggacggatccaagatttcgtg 1308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 tttgccaacatggacgatgatactctccatgtggcgcttggacggatccaagatttcgtg 1203
Query: 1309 tctaagaacaagaacaagatcgtcgagaaagcatctgaaaatgatcaggtaatccagaac 1368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tctaagaacaagaacaagatcgtcgagaaagcatctgaaaatgatcaggtaatccagaac 1263
Query: 1369 aagagtgctaaaaagctgaaatggacgcagaccaatcttcgactaagtttccgacgactt 1428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 aagagtgctaaaaagctgaaatggacgcagaccaatcttcgactaagtttccgacgactt 1323
Query: 1429 tacgaggatggtctctcgtctccagggataatgtcaccacactcacctcttctccgagca 1488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1324 tacgaggatggtctctcgtctccagggataatgtcaccacactcacctcttctccgagca 1383
Query: 1489 tga 1491
|||
Sbjct: 1384 tga 1386
>At3g61510.1 68416.m06889 1-aminocyclopropane-1-carboxylate synthase, putative /
ACC synthase, putative similar to ACC synthases from
Citrus sinensis [GI:6434142], Cucumis melo [GI:695402],
Cucumis sativus [GI:3641645]
Length = 1467
Score = 117 bits (59), Expect = 3e-25
Identities = 113/131 (86%)
Strand = Plus / Plus
Query: 356 cggagagggtggttatgagcggaggagccaccggagccaatgaaacaatcatgttctgcc 415
||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 353 cggagagggtggtgatgagcggaggagccaccggagcaaatgagacgatcatgttctgtc 412
Query: 416 ttgcggatcccggcgacgttttcctcattccctccccgtactatgccgcatttgatagag 475
|||| ||||||||||||| ||| ||| | || | || || ||||| ||||| |||||||
Sbjct: 413 ttgctgatcccggcgacgcttttctcgtccctactccttattatgctgcattcgatagag 472
Query: 476 acttgaggtgg 486
|||| ||||||
Sbjct: 473 acttaaggtgg 483
Score = 50.1 bits (25), Expect = 5e-05
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 86 atggatggaaagcttacgacaaagatccttttcatctttcccgtaacccccatgggatca 145
|||| ||||||||||||||||| |||||||||||| | | ||| || || || | |
Sbjct: 83 atggctggaaagcttacgacaataatccttttcatccaactcataatccacaaggagtta 142
Query: 146 tccaaatgggtcttgcagagaatcagctttgcttagatttgatcaaaga 194
| ||||||||||| || || ||||| ||||| | |||||||||||||||
Sbjct: 143 ttcaaatgggtctcgccgaaaatcaactttgttcagatttgatcaaaga 191
Score = 36.2 bits (18), Expect = 0.83
Identities = 39/46 (84%)
Strand = Plus / Plus
Query: 1070 cttgtttgacaagcaacgctggtttatttgcgtggatggatttgag 1115
|||| |||| ||||||||| |||||||| | | ||||||||||||
Sbjct: 1052 cttgcttgagaagcaacgcgggtttattcgttttgatggatttgag 1097
>At5g28360.1 68418.m03444 1-aminocyclopropane-1-carboxylate synthase, putative /
ACC synthase, putative similar to
1-aminocyclopropane-1-carboxylate synthase 1 [Lupinus
albus] GI:6650976; contains Pfam profile PF00155:
Aminotransferase class I and II
Length = 507
Score = 107 bits (54), Expect = 3e-22
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 356 cggagagggtggttatgagcggaggagccaccggagccaatgaaacaatcatgttctgcc 415
||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 353 cggagagggtggtgatgagcggaggagccaccggagcaaatgagacgatcatgttctgtc 412
Query: 416 ttgcggatcccggcgacg 433
|||| |||||||||||||
Sbjct: 413 ttgctgatcccggcgacg 430
Score = 50.1 bits (25), Expect = 5e-05
Identities = 88/109 (80%)
Strand = Plus / Plus
Query: 86 atggatggaaagcttacgacaaagatccttttcatctttcccgtaacccccatgggatca 145
|||| ||||||||||||||||| |||||||||||| | | ||| || || || | |
Sbjct: 83 atggctggaaagcttacgacaataatccttttcatccaactcataatccacaaggagtta 142
Query: 146 tccaaatgggtcttgcagagaatcagctttgcttagatttgatcaaaga 194
| ||||||||||| || || ||||| ||||| | |||||||||||||||
Sbjct: 143 ttcaaatgggtctcgccgaaaatcaactttgttcagatttgatcaaaga 191
>At4g11280.1 68417.m01824 1-aminocyclopropane-1-carboxylate synthase 6 / ACC
synthase 6 (ACS6) identical to GI:3746125
Length = 1753
Score = 69.9 bits (35), Expect = 6e-11
Identities = 107/131 (81%)
Strand = Plus / Plus
Query: 808 ttgattcacattgtctatagtctttctaaagatatgggacttcctggttttagagtcggg 867
||||| || ||||| |||||||| |||||||||||||| || |||||||| ||||| ||
Sbjct: 882 ttgatacatattgtgtatagtctatctaaagatatgggtctgcctggtttaagagttggt 941
Query: 868 atagtctattctttcaatgactcggtcgtgtcttgcgcaagaaaaatgtcaagtttcgga 927
||||| || |||| ||||||| ||| || |||||| |||||||| ||||||||
Sbjct: 942 atagtatactcttacaatgacagggtggttcagatcgcaaggaaaatgtcgagtttcggt 1001
Query: 928 cttgtttcgtc 938
|||||||||||
Sbjct: 1002 cttgtttcgtc 1012
Score = 34.2 bits (17), Expect = 3.3
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 148 caaatgggtcttgcagagaatcagctttg 176
||||||||||| || || |||||||||||
Sbjct: 228 caaatgggtctcgctgaaaatcagctttg 256
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 41,947
Number of Sequences: 29161
Number of extensions: 41947
Number of successful extensions: 929
Number of sequences better than 10.0: 27
length of query: 1491
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1473
effective length of database: 43,533,334
effective search space: 64124600982
effective search space used: 64124600982
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)