BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01430.F
(1329 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01430.1 68414.m00058 expressed protein similar to hypot... 2076 0.0
At4g01080.1 68417.m00146 expressed protein 168 8e-41
At4g11090.1 68417.m01801 expressed protein other hypothetic... 60 5e-08
At4g23790.1 68417.m03421 expressed protein many other Arabi... 48 2e-04
At4g38910.1 68417.m05514 expressed protein 40 0.047
>At1g01430.1 68414.m00058 expressed protein similar to hypothetical protein
GB:CAB80917 GI:7267605 from [Arabidopsis thaliana]
Length = 1642
Score = 2076 bits (1047), Expect = 0.0
Identities = 1047/1047 (100%)
Strand = Plus / Plus
Query: 283 gacccatcagggccaatctacaccaatgtctcttgccgtcatatccaagattaccaaaat 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gacccatcagggccaatctacaccaatgtctcttgccgtcatatccaagattaccaaaat 503
Query: 343 tgcttgaaaaacggaaggccagatgtgaattaccttcgatggagatggcaacctcgcgat 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgcttgaaaaacggaaggccagatgtgaattaccttcgatggagatggcaacctcgcgat 563
Query: 403 tgcgatctcccgaggtttaaccctgagcaattccttgacaatatgaggaacaaatggttg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tgcgatctcccgaggtttaaccctgagcaattccttgacaatatgaggaacaaatggttg 623
Query: 463 gcttttatcggtgattccatctctcgtaaccatgtccaatccctcctctgcattctctct 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gcttttatcggtgattccatctctcgtaaccatgtccaatccctcctctgcattctctct 683
Query: 523 caggtagaagaagtagaagatatcttccatgacaaggaatacaaatcaaggatctggaga 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 caggtagaagaagtagaagatatcttccatgacaaggaatacaaatcaaggatctggaga 743
Query: 583 ttcccttcttacaacttcacactctctgtcatttggtctcctttccttgtaaaagctgaa 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttcccttcttacaacttcacactctctgtcatttggtctcctttccttgtaaaagctgaa 803
Query: 643 acctttgagaacggagttcctttctcagacattcgagtacacctcgacaagctagaccag 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 acctttgagaacggagttcctttctcagacattcgagtacacctcgacaagctagaccag 863
Query: 703 aaatggactgatcagtacatcaatttcgactacgttgtcatctccggtggaaaatggttc 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 aaatggactgatcagtacatcaatttcgactacgttgtcatctccggtggaaaatggttc 923
Query: 763 ctcaaaacaacaatcttccatgaaaacaacaccgtaaccggatgccattactgccaaggg 822
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 ctcaaaacaacaatcttccatgaaaacaacaccgtaaccggatgccattactgccaaggg 983
Query: 823 aagaacaatatgaccgaactcggttatctatactcgtaccgaaaggttcttcatttggtt 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 aagaacaatatgaccgaactcggttatctatactcgtaccgaaaggttcttcatttggtt 1043
Query: 883 ttagactttgtcgctgaaccgaaccataaagctcaggttctcttcagaacaacaacacct 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 ttagactttgtcgctgaaccgaaccataaagctcaggttctcttcagaacaacaacacct 1103
Query: 943 gatcatttcgagaatggagagtgggactctggtggtttctgtaaccgaacaatgccgttt 1002
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 gatcatttcgagaatggagagtgggactctggtggtttctgtaaccgaacaatgccgttt 1163
Query: 1003 acggaaggcagcgaaggagagatgaagagcgaggatgtatcgatgcgtgatatcgagctt 1062
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 acggaaggcagcgaaggagagatgaagagcgaggatgtatcgatgcgtgatatcgagctt 1223
Query: 1063 gaagagttctataagactactactacacaacaagaaggttccaattcaaacattgtatta 1122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 gaagagttctataagactactactacacaacaagaaggttccaattcaaacattgtatta 1283
Query: 1123 cttgacacaacttcaatgtcgcttctccgaccagatggacatccgggaccgtaccggtat 1182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 cttgacacaacttcaatgtcgcttctccgaccagatggacatccgggaccgtaccggtat 1343
Query: 1183 ccaaatcctttcgctgggctgaagaacaaggagctgaatcaggttcagaacgattgtctt 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 ccaaatcctttcgctgggctgaagaacaaggagctgaatcaggttcagaacgattgtctt 1403
Query: 1243 cattggtgcttacccggtccgattgattcatggaatgatctaatggtcgaggtgatgctt 1302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 cattggtgcttacccggtccgattgattcatggaatgatctaatggtcgaggtgatgctt 1463
Query: 1303 aaccgggaacggcaaagacgagaatag 1329
|||||||||||||||||||||||||||
Sbjct: 1464 aaccgggaacggcaaagacgagaatag 1490
Score = 561 bits (283), Expect = e-159
Identities = 283/283 (100%)
Strand = Plus / Plus
Query: 1 atggattcattgagattaatatctaagagcatcaagattgaaggaaccccatttggttcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 atggattcattgagattaatatctaagagcatcaagattgaaggaaccccatttggttcc 179
Query: 61 tctcaccaacgcaatcaaattttcctcaaatccgtcgctttcttccttttgatcggtctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tctcaccaacgcaatcaaattttcctcaaatccgtcgctttcttccttttgatcggtctc 239
Query: 121 gcttaccgttttctcatcactaattccaccgtctctccggttcccaccgttcgatcctcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 gcttaccgttttctcatcactaattccaccgtctctccggttcccaccgttcgatcctcg 299
Query: 181 ccggaatctctcccgccggatccttcaggtctcactgccatcactcaaacttcagcctct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccggaatctctcccgccggatccttcaggtctcactgccatcactcaaacttcagcctct 359
Query: 241 gtcgattccccagcaaacatcacaaccattgcttcacagaatg 283
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 gtcgattccccagcaaacatcacaaccattgcttcacagaatg 402
>At4g01080.1 68417.m00146 expressed protein
Length = 1582
Score = 168 bits (85), Expect = 8e-41
Identities = 157/181 (86%)
Strand = Plus / Plus
Query: 450 gaacaaatggttggcttttatcggtgattccatctctcgtaaccatgtccaatccctcct 509
||||||||||| ||||||||||||||||||||| ||||||| |||||||| || ||| |
Sbjct: 486 gaacaaatggtgggcttttatcggtgattccattgctcgtaatcatgtccagtctctcat 545
Query: 510 ctgcattctctctcaggtagaagaagtagaagatatcttccatgacaaggaatacaaatc 569
|||||||||||||||||| |||||||| || || |||| || || ||||| | || |||
Sbjct: 546 ctgcattctctctcaggtggaagaagtggaggaaatctatcacgataaggagttcagatc 605
Query: 570 aaggatctggagattcccttcttacaacttcacactctctgtcatttggtctcctttcct 629
| ||| ||||||||||||||| ||||||||||||| || ||||||||||||||||||||
Sbjct: 606 caagatatggagattcccttctcacaacttcacactatcagtcatttggtctcctttcct 665
Query: 630 t 630
|
Sbjct: 666 t 666
Score = 105 bits (53), Expect = 1e-21
Identities = 149/178 (83%), Gaps = 6/178 (3%)
Strand = Plus / Plus
Query: 1137 aatgtcgcttctccgaccagatggacatccgggaccgtaccggtatccaaatcctttcgc 1196
|||||| |||||||| ||||| || ||||||||||| |||||| ||||||||||||| ||
Sbjct: 1152 aatgtctcttctccgtccagacgggcatccgggaccataccggcatccaaatccttttgc 1211
Query: 1197 tgggctgaagaacaaggagctgaatcaggttcagaacgattgtcttcattggtgcttacc 1256
||| | ||||| ||| ||| ||| |||||||| |||||||| ||||||||||||||
Sbjct: 1212 tggagttaagaataag-agc--aat---gttcagaatgattgtctgcattggtgcttacc 1265
Query: 1257 cggtccgattgattcatggaatgatctaatggtcgaggtgatgcttaaccgggaacgg 1314
||||| |||||||||||||||||| | ||||| || | ||||||||||||||||
Sbjct: 1266 tggtccaattgattcatggaatgatgtgatggtggaaaccacgcttaaccgggaacgg 1323
Score = 85.7 bits (43), Expect = 9e-16
Identities = 115/139 (82%)
Strand = Plus / Plus
Query: 683 acctcgacaagctagaccagaaatggactgatcagtacatcaatttcgactacgttgtca 742
|||||||| |||| ||||| |||||||||| || ||| || |||||||||||||| |
Sbjct: 707 acctcgaccagcttgaccacaaatggactgtccaatacccgaaattcgactacgttgtta 766
Query: 743 tctccggtggaaaatggttcctcaaaacaacaatcttccatgaaaacaacaccgtaaccg 802
|||| || || |||||||| || ||||||||||| ||||||||||||||| || || |
Sbjct: 767 tctctggaggcaaatggtttcttaaaacaacaattttccatgaaaacaacgtagtcacgg 826
Query: 803 gatgccattactgccaagg 821
| || ||||||||||||||
Sbjct: 827 gctgtcattactgccaagg 845
Score = 34.2 bits (17), Expect = 2.9
Identities = 50/61 (81%)
Strand = Plus / Plus
Query: 361 ccagatgtgaattaccttcgatggagatggcaacctcgcgattgcgatctcccgaggttt 420
|||||||||||||| || ||||||||| | ||||| ||||| ||||| || ||||||
Sbjct: 397 ccagatgtgaattatctcttctggagatggaagcctcgtgattgtgatcttcctaggttt 456
Query: 421 a 421
|
Sbjct: 457 a 457
>At4g11090.1 68417.m01801 expressed protein other hypothetical proteins -
Arabidopsis thaliana
Length = 1454
Score = 60.0 bits (30), Expect = 5e-08
Identities = 39/42 (92%)
Strand = Plus / Plus
Query: 1228 cagaacgattgtcttcattggtgcttacccggtccgattgat 1269
|||||||||||||| ||||||||||| || ||||||||||||
Sbjct: 1251 cagaacgattgtctgcattggtgcttgcctggtccgattgat 1292
Score = 38.2 bits (19), Expect = 0.19
Identities = 46/55 (83%)
Strand = Plus / Plus
Query: 444 tatgaggaacaaatggttggcttttatcggtgattccatctctcgtaaccatgtc 498
||||||||| |||| | |||| | |||||||| ||||| ||||||||||||||
Sbjct: 476 tatgaggaataaatcttgggctataatcggtgactccattgctcgtaaccatgtc 530
>At4g23790.1 68417.m03421 expressed protein many other Arabidopsis putative
proteins
Length = 1455
Score = 48.1 bits (24), Expect = 2e-04
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 1223 aggttcagaacgattgtcttcattggtgcttacccggtccgattgatt 1270
|||| |||||||||||| | ||||||||||| || |||||| ||||||
Sbjct: 1235 aggtacagaacgattgtttgcattggtgcttgcctggtccgtttgatt 1282
Score = 36.2 bits (18), Expect = 0.74
Identities = 33/38 (86%)
Strand = Plus / Plus
Query: 466 tttatcggtgattccatctctcgtaaccatgtccaatc 503
||||| ||||| ||||| ||||||||||| ||| ||||
Sbjct: 481 tttattggtgactccatatctcgtaaccacgtcgaatc 518
>At4g38910.1 68417.m05514 expressed protein
Length = 1338
Score = 40.1 bits (20), Expect = 0.047
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 98 ctttcttccttttgatcggtctcg 121
|||||||||||||| |||||||||
Sbjct: 490 ctttcttccttttggtcggtctcg 467
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 44,192
Number of Sequences: 29161
Number of extensions: 44192
Number of successful extensions: 1154
Number of sequences better than 10.0: 37
length of query: 1329
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1311
effective length of database: 43,533,334
effective search space: 57072200874
effective search space used: 57072200874
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)