BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BT006399.F
(564 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01360.1 68414.m00051 expressed protein similar to hypot... 1118 0.0
At4g01026.1 68417.m00139 expressed protein 351 4e-96
At5g53160.2 68418.m06609 expressed protein similar to unkno... 78 9e-14
At5g53160.1 68418.m06608 expressed protein similar to unkno... 78 9e-14
At4g27920.1 68417.m04007 expressed protein various predicte... 62 5e-09
>At1g01360.1 68414.m00051 expressed protein similar to hypothetical protein
GB:CAB45785 GI:5262156 from [Arabidopsis thaliana]
Length = 941
Score = 1118 bits (564), Expect = 0.0
Identities = 564/564 (100%)
Strand = Plus / Plus
Query: 1 atgatggacggcgttgaaggcggcacggcgatgtacggtggtctcgagacggtgcaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 atgatggacggcgttgaaggcggcacggcgatgtacggtggtctcgagacggtgcaatac 174
Query: 61 gtacggacgcatcatcaacatctgtgcagagaaaaccagtgtacctctgctcttgtcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 gtacggacgcatcatcaacatctgtgcagagaaaaccagtgtacctctgctcttgtcaaa 234
Query: 121 cacatcaaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 cacatcaaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcag 294
Query: 181 aaatacaaaccgtttgtgagcagatgtacagtaatcggtgatcctgaaatcggcagtctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaatacaaaccgtttgtgagcagatgtacagtaatcggtgatcctgaaatcggcagtctt 354
Query: 241 agagaagtcaatgttaaatctggtcttcctgcaacaacatctactgagagattagaactt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 agagaagtcaatgttaaatctggtcttcctgcaacaacatctactgagagattagaactt 414
Query: 301 cttgatgatgaagaacacatcctcggtatcaaaatcatcggtggtgatcacagacttaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cttgatgatgaagaacacatcctcggtatcaaaatcatcggtggtgatcacagacttaag 474
Query: 361 aattactcgtcgattttgacggttcatccggagataatcgagggaagagcaggaacgatg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aattactcgtcgattttgacggttcatccggagataatcgagggaagagcaggaacgatg 534
Query: 421 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 594
Query: 481 tttgttgaagcacttatcagatgtaatctcaagtcactagcagatgtttctgaaagattg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 tttgttgaagcacttatcagatgtaatctcaagtcactagcagatgtttctgaaagattg 654
Query: 541 gcttctcaggacattactcagtga 564
||||||||||||||||||||||||
Sbjct: 655 gcttctcaggacattactcagtga 678
>At4g01026.1 68417.m00139 expressed protein
Length = 1127
Score = 351 bits (177), Expect = 4e-96
Identities = 399/473 (84%)
Strand = Plus / Plus
Query: 85 tgcagagaaaaccagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctc 144
|||||||| |||||||||||||||| ||| |||||| |||| |||||||| |||||||
Sbjct: 181 tgcagagagaaccagtgtacctctgttctcgtcaaatacattcaagctcctgttcatctt 240
Query: 145 gtttggtcacttgtacggagatttgatcagccgcagaaatacaaaccgtttgtgagcaga 204
||||||||||| || |||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct: 241 gtttggtcactggtgcggagatttgatcagccgcagaaatacaaaccatttataagcaga 300
Query: 205 tgtacagtaatcggtgatcctgaaatcggcagtcttagagaagtcaatgttaaatctggt 264
|| || |||| ||||||||||| ||||| |||| |||||||| ||||| |||||||||
Sbjct: 301 tgcactgtaaatggtgatcctgagatcggttgtctcagagaagtaaatgtcaaatctggt 360
Query: 265 cttcctgcaacaacatctactgagagattagaacttcttgatgatgaagaacacatcctc 324
||||| ||||| || ||| |||||||| |||| ||||||||||||||||||||||||
Sbjct: 361 cttccagcaaccaccagtacagagagattggaacagcttgatgatgaagaacacatcctc 420
Query: 325 ggtatcaaaatcatcggtggtgatcacagacttaagaattactcgtcgattttgacggtt 384
|||||||| ||||| ||||||||||| ||||||||||||||||| ||||| ||||| ||
Sbjct: 421 ggtatcaacatcattggtggtgatcatagacttaagaattactcttcgatcttgactgtg 480
Query: 385 catccggagataatcgagggaagagcaggaacgatggtgattgaatcgtttgtagttgat 444
||||||||||| || || ||||| ||||||| |||||||| || || ||||| || |||
Sbjct: 481 catccggagatgattgatggaaggtcaggaactatggtgatggagtcttttgttgtggat 540
Query: 445 gttcctcaaggtaacacaaaggatgagacttgctactttgttgaagcacttatcagatgt 504
||||||||||| ||||| || ||||| || || ||||| || ||| |||| || | |||
Sbjct: 541 gttcctcaaggcaacaccaaagatgatacatgttacttcgtggaatcactcataaagtgt 600
Query: 505 aatctcaagtcactagcagatgtttctgaaagattggcttctcaggacattac 557
|| ||||| || | || ||| ||||||||||||||| |||| ||||||||
Sbjct: 601 aacctcaaatccttggcttgtgtctctgaaagattggctgctcaagacattac 653
>At5g53160.2 68418.m06609 expressed protein similar to unknown protein
(pir||T02893)
Length = 1182
Score = 77.8 bits (39), Expect = 9e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 421 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 480
|||||||| || ||||| |||||||| || |||| |||||||||||||||||||| |||
Sbjct: 723 gtgattgagtcatttgtggttgatgtaccagaaggaaacacaaaggatgagacttgttac 782
Query: 481 tttgttgaagc 491
|||||||||||
Sbjct: 783 tttgttgaagc 793
Score = 61.9 bits (31), Expect = 5e-09
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 97 cagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctcgtttggtcactt 156
||||||| |||| | ||||| ||||| ||||| |||||| ||||| | || |||||||||
Sbjct: 399 cagtgtagctctacgcttgttaaacatatcaacgctcctgttcatattgtgtggtcactt 458
Query: 157 gtacggagatttgatcagccgcagaaatacaaaccgttt 195
|| | |||||||||||||| ||||| || || ||||||
Sbjct: 459 gtgagaagatttgatcagccacagaagtataagccgttt 497
Score = 42.1 bits (21), Expect = 0.005
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 326 gtatcaaaatcatcggtggtgatcacagacttaagaa 362
|||||| |||| | ||||||||||| |||||||||||
Sbjct: 628 gtatcagaatcgttggtggtgatcatagacttaagaa 664
>At5g53160.1 68418.m06608 expressed protein similar to unknown protein
(pir||T02893)
Length = 1262
Score = 77.8 bits (39), Expect = 9e-14
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 421 gtgattgaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgctac 480
|||||||| || ||||| |||||||| || |||| |||||||||||||||||||| |||
Sbjct: 803 gtgattgagtcatttgtggttgatgtaccagaaggaaacacaaaggatgagacttgttac 862
Query: 481 tttgttgaagc 491
|||||||||||
Sbjct: 863 tttgttgaagc 873
Score = 61.9 bits (31), Expect = 5e-09
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 97 cagtgtacctctgctcttgtcaaacacatcaaagctcctcttcatctcgtttggtcactt 156
||||||| |||| | ||||| ||||| ||||| |||||| ||||| | || |||||||||
Sbjct: 399 cagtgtagctctacgcttgttaaacatatcaacgctcctgttcatattgtgtggtcactt 458
Query: 157 gtacggagatttgatcagccgcagaaatacaaaccgttt 195
|| | |||||||||||||| ||||| || || ||||||
Sbjct: 459 gtgagaagatttgatcagccacagaagtataagccgttt 497
Score = 38.2 bits (19), Expect = 0.078
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 326 gtatcaaaatcatcggtggtgatcacagacttaag 360
|||||| |||| | ||||||||||| |||||||||
Sbjct: 628 gtatcagaatcgttggtggtgatcatagacttaag 662
>At4g27920.1 68417.m04007 expressed protein various predicted proteins
Length = 583
Score = 61.9 bits (31), Expect = 5e-09
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 121 cacatcaaagctcctcttcatctcgtttggtcacttgtacggagatttgatcagccgcag 180
||||||||||||||||| |||||||| |||||| |||| ||||||| ||| | || ||
Sbjct: 100 cacatcaaagctcctctgcatctcgtgtggtcaattgtgaggagattcgatgaaccacaa 159
Query: 181 aaatacaaacc 191
|||||||||||
Sbjct: 160 aaatacaaacc 170
Score = 40.1 bits (20), Expect = 0.020
Identities = 44/52 (84%)
Strand = Plus / Plus
Query: 427 gaatcgtttgtagttgatgttcctcaaggtaacacaaaggatgagacttgct 478
|||||||| || || ||||| || |||||||||||||||| ||||| ||||
Sbjct: 409 gaatcgttcgtggtggatgtgccggaaggtaacacaaaggaggagacatgct 460
Score = 36.2 bits (18), Expect = 0.31
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 340 ggtggtgatcacagacttaagaatta 365
||||||||||| ||||| ||||||||
Sbjct: 322 ggtggtgatcatagactcaagaatta 347
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,545
Number of Sequences: 29161
Number of extensions: 19545
Number of successful extensions: 1762
Number of sequences better than 10.0: 46
length of query: 564
length of database: 44,058,232
effective HSP length: 17
effective length of query: 547
effective length of database: 43,562,495
effective search space: 23828684765
effective search space used: 23828684765
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)