BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BT006619.F
(1458 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01300.1 68414.m00046 aspartyl protease family protein c... 2890 0.0
At3g61820.1 68416.m06939 aspartyl protease family protein c... 72 1e-11
At3g18490.1 68416.m02350 aspartyl protease family protein c... 50 5e-05
At3g61030.1 68416.m06828 C2 domain-containing protein simil... 42 0.013
At3g60950.1 68416.m06819 C2 domain-containing protein simil... 42 0.013
>At1g01300.1 68414.m00046 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1822
Score = 2890 bits (1458), Expect = 0.0
Identities = 1458/1458 (100%)
Strand = Plus / Plus
Query: 1 atggtaggaagaagaaaagctttactcttttctctctgtttcttcttcctctctcttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 atggtaggaagaagaaaagctttactcttttctctctgtttcttcttcctctctcttcct 182
Query: 61 tccttctcttcccttccatccttccaaaccctattccccaattctcattcccttccttgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 tccttctcttcccttccatccttccaaaccctattccccaattctcattcccttccttgt 242
Query: 121 gcttctcccgtctcattccaacccgactccgactccgagtcactgctagaatccgaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 gcttctcccgtctcattccaacccgactccgactccgagtcactgctagaatccgaattt 302
Query: 181 gaatccggatccgactccgagtcttcttcttccattactctaaacctcgaccacatcgat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gaatccggatccgactccgagtcttcttcttccattactctaaacctcgaccacatcgat 362
Query: 241 gctctctcctccaacaaaacacccgacgagctattcagctcccgtctccaacgtgactcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gctctctcctccaacaaaacacccgacgagctattcagctcccgtctccaacgtgactcc 422
Query: 301 cggcgcgtgaaatctatcgccacactcgccgctcaaatccccggaagaaacgtgactcac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 cggcgcgtgaaatctatcgccacactcgccgctcaaatccccggaagaaacgtgactcac 482
Query: 361 gcgccacgacccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 gcgccacgacccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcggt 542
Query: 421 gaatacttcacgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcgac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gaatacttcacgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcgac 602
Query: 481 accggcagcgacatcgtctggctacaatgcgctccttgtcggagatgctactctcaatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 accggcagcgacatcgtctggctacaatgcgctccttgtcggagatgctactctcaatcc 662
Query: 541 gacccgatattcgacccgagaaaatccaagacctatgccacaatcccctgttcttcacct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 gacccgatattcgacccgagaaaatccaagacctatgccacaatcccctgttcttcacct 722
Query: 601 cactgccgccgattagactccgccggatgcaacacccgtcgtaagacttgtctctaccaa 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 cactgccgccgattagactccgccggatgcaacacccgtcgtaagacttgtctctaccaa 782
Query: 661 gtctcttacggagatggttctttcaccgtcggcgatttctccaccgaaacgctaactttc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 gtctcttacggagatggttctttcaccgtcggcgatttctccaccgaaacgctaactttc 842
Query: 721 cggcgaaatcgcgttaaaggcgttgctctcggatgtggccacgacaacgaaggtctcttc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 843 cggcgaaatcgcgttaaaggcgttgctctcggatgtggccacgacaacgaaggtctcttc 902
Query: 781 gtcggagccgccggtttattaggactcggtaaaggtaaattatcgttccccggtcaaacc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903 gtcggagccgccggtttattaggactcggtaaaggtaaattatcgttccccggtcaaacc 962
Query: 841 ggtcaccggtttaatcagaaattctcttactgtttagtcgacagatccgcttcttcgaaa 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963 ggtcaccggtttaatcagaaattctcttactgtttagtcgacagatccgcttcttcgaaa 1022
Query: 901 ccttcctcggtcgtcttcggaaacgccgccgtatcacgaatcgcgagattcacgccactt 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 ccttcctcggtcgtcttcggaaacgccgccgtatcacgaatcgcgagattcacgccactt 1082
Query: 961 ttgtcaaacccaaaactcgacactttctactacgtcgggcttctgggaattagcgtcgga 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ttgtcaaacccaaaactcgacactttctactacgtcgggcttctgggaattagcgtcgga 1142
Query: 1021 gggacacgtgtccccggcgtaacggcttctctttttaaacttgaccagatcggtaacggt 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 gggacacgtgtccccggcgtaacggcttctctttttaaacttgaccagatcggtaacggt 1202
Query: 1081 ggagttattatcgattcgggtacgtctgtgacccggttgatccgaccagcttatattgct 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 ggagttattatcgattcgggtacgtctgtgacccggttgatccgaccagcttatattgct 1262
Query: 1141 atgagagacgcgttccgggtcggagctaagacattgaaaagagctccggatttctcactc 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1263 atgagagacgcgttccgggtcggagctaagacattgaaaagagctccggatttctcactc 1322
Query: 1201 ttcgacacgtgtttcgatctctccaatatgaacgaggttaaagtaccgacggtggtttta 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1323 ttcgacacgtgtttcgatctctccaatatgaacgaggttaaagtaccgacggtggtttta 1382
Query: 1261 catttccgtggagctgacgtatcacttccggcgacgaattacctgatccctgtggatacc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1383 catttccgtggagctgacgtatcacttccggcgacgaattacctgatccctgtggatacc 1442
Query: 1321 aacggcaagttctgttttgcgtttgccggtacgatgggcggactatccataattgggaat 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1443 aacggcaagttctgttttgcgtttgccggtacgatgggcggactatccataattgggaat 1502
Query: 1381 atccagcaacagggtttccgggttgtatacgacttagcgagttcccgggtcgggtttgct 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1503 atccagcaacagggtttccgggttgtatacgacttagcgagttcccgggtcgggtttgct 1562
Query: 1441 ccaggaggatgcgcttaa 1458
||||||||||||||||||
Sbjct: 1563 ccaggaggatgcgcttaa 1580
>At3g61820.1 68416.m06939 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1827
Score = 71.9 bits (36), Expect = 1e-11
Identities = 120/148 (81%)
Strand = Plus / Plus
Query: 371 ccggtggattcagcagctcagtcgtctctggtctctctcaaggaagcggtgaatacttca 430
|||||||||| ||| || |||| ||||||| ||||| ||||||||||| || || || |
Sbjct: 455 ccggtggatttagcggcgcagttatctctggcctctcacaaggaagcggagagtatttta 514
Query: 431 cgcgcctcggtgtcggcactccggcgagatatgtttacatggtgctcgacaccggcagcg 490
| | | ||||| || |||||||||| | |||||||||||||||||||| || ||||
Sbjct: 515 tgaggttaggtgttggaactccggcgactaacgtttacatggtgctcgacacaggaagcg 574
Query: 491 acatcgtctggctacaatgcgctccttg 518
|| |||| ||||| |||||| |||||||
Sbjct: 575 acgtcgtttggctccaatgctctccttg 602
Score = 54.0 bits (27), Expect = 3e-06
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 643 aagacttgtctctaccaagtctcttacggagatggttctttcaccgtcggcgatttctcc 702
|||||||||||||||||||| || ||||| || || || ||||||| || ||||||||
Sbjct: 733 aagacttgtctctaccaagtatcgtacggtgacggatcattcaccgaaggagatttctca 792
Query: 703 accgaaacgct 713
|| ||||||||
Sbjct: 793 actgaaacgct 803
Score = 46.1 bits (23), Expect = 8e-04
Identities = 62/75 (82%)
Strand = Plus / Plus
Query: 1329 gttctgttttgcgtttgccggtacgatgggcggactatccataattgggaatatccagca 1388
||||||||||||||||||||| || ||||| | | || || ||||| || || |||||
Sbjct: 1431 gttctgttttgcgtttgccggaactatggggagtttgtcaatcattggaaacatacagca 1490
Query: 1389 acagggtttccgggt 1403
||| |||||||||||
Sbjct: 1491 acaaggtttccgggt 1505
Score = 38.2 bits (19), Expect = 0.20
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1201 ttcgacacgtgtttcgatctctc 1223
|||||||||||||| ||||||||
Sbjct: 1303 ttcgacacgtgttttgatctctc 1325
Score = 34.2 bits (17), Expect = 3.2
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 859 aaattctcttactgttt 875
|||||||||||||||||
Sbjct: 949 aaattctcttactgttt 965
>At3g18490.1 68416.m02350 aspartyl protease family protein contains Pfam domain,
PF00026: eukaryotic aspartyl protease
Length = 1914
Score = 50.1 bits (25), Expect = 5e-05
Identities = 40/45 (88%)
Strand = Plus / Plus
Query: 754 tgtggccacgacaacgaaggtctcttcgtcggagccgccggttta 798
||||| |||||||||||||||||||| |||||| |||||||||
Sbjct: 887 tgtggtcacgacaacgaaggtctctttaccggagcagccggttta 931
Score = 48.1 bits (24), Expect = 2e-04
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 649 tgtctctaccaagtctcttacggagatggttctttcaccgtcgg 692
|||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 779 tgtctctaccaagttagttacggagacggatctttcaccgtcgg 822
Score = 44.1 bits (22), Expect = 0.003
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1288 ccggcgacgaattacctgatccctgtggat 1317
||||||| |||||| |||||||||||||||
Sbjct: 1412 ccggcgaagaattatctgatccctgtggat 1441
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 977 tcgacactttctactacgtcgg 998
||||||||||||||||||||||
Sbjct: 1098 tcgacactttctactacgtcgg 1119
Score = 40.1 bits (20), Expect = 0.052
Identities = 71/88 (80%)
Strand = Plus / Plus
Query: 405 ctctcaaggaagcggtgaatacttcacgcgcctcggtgtcggcactccggcgagatatgt 464
||||||||||||||| || || ||| | | |||||||||| |||||||||| | | |
Sbjct: 541 ctctcaaggaagcggcgagtatttctcaagaatcggtgtcggaactccggcgaaagagat 600
Query: 465 ttacatggtgctcgacaccggcagcgac 492
||| |||| ||||||||||| ||||||
Sbjct: 601 gtacttggttctcgacaccggaagcgac 628
>At3g61030.1 68416.m06828 C2 domain-containing protein similar to CLB1
[Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 1779
Score = 42.1 bits (21), Expect = 0.013
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 tttactcttttctctctgttt 41
|||||||||||||||||||||
Sbjct: 1400 tttactcttttctctctgttt 1380
>At3g60950.1 68416.m06819 C2 domain-containing protein similar to CLB1
[Lycopersicon esculentum] GI:2789434; contains Pfam
profile PF00168: C2 domain
Length = 1779
Score = 42.1 bits (21), Expect = 0.013
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 21 tttactcttttctctctgttt 41
|||||||||||||||||||||
Sbjct: 1400 tttactcttttctctctgttt 1380
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,334
Number of Sequences: 29161
Number of extensions: 55334
Number of successful extensions: 1640
Number of sequences better than 10.0: 58
length of query: 1458
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1440
effective length of database: 43,533,334
effective search space: 62688000960
effective search space used: 62688000960
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)