BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BT004517.F
(1773 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) fami... 3515 0.0
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) fami... 76 1e-12
At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) fami... 68 3e-10
At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) fami... 62 2e-08
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)... 60 7e-08
>At1g01260.1 68414.m00043 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 2578
Score = 3515 bits (1773), Expect = 0.0
Identities = 1773/1773 (100%)
Strand = Plus / Plus
Query: 1 atgaatattggtcgcctagtgtggaacgaggacgataaagcgattgttgcgtcattactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 atgaatattggtcgcctagtgtggaacgaggacgataaagcgattgttgcgtcattactg 623
Query: 61 ggcaaacgagctctcgattacttgctttccaactctgtttccaatgctaatctcttgatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ggcaaacgagctctcgattacttgctttccaactctgtttccaatgctaatctcttgatg 683
Query: 121 actctaggaagcgacgagaatctgcagaacaagctctcggatctcgtcgagagacccaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 actctaggaagcgacgagaatctgcagaacaagctctcggatctcgtcgagagacccaac 743
Query: 181 gcttctaatttctcttggaactacgccattttctggcagatttccaggtcaaaggccgga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gcttctaatttctcttggaactacgccattttctggcagatttccaggtcaaaggccgga 803
Query: 241 gatttggttctctgttggggcgatggatattgcagagagcctaaagaaggagagaaatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gatttggttctctgttggggcgatggatattgcagagagcctaaagaaggagagaaatca 863
Query: 301 gagatcgttaggattctaagtatgggaagagaagaagaaacgcatcagactatgagaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 864 gagatcgttaggattctaagtatgggaagagaagaagaaacgcatcagactatgagaaag 923
Query: 361 agagtattgcaaaagcttcatgatttgtttggtggctcagaagaagagaactgtgcttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 924 agagtattgcaaaagcttcatgatttgtttggtggctcagaagaagagaactgtgcttta 983
Query: 421 ggactagatagagttactgacactgagatgtttcttctttcttctatgtatttctcattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 ggactagatagagttactgacactgagatgtttcttctttcttctatgtatttctcattc 1043
Query: 481 cctcgaggtgaaggtggtccaggcaagtgttttgcctctgctaaacctgtttggttatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 cctcgaggtgaaggtggtccaggcaagtgttttgcctctgctaaacctgtttggttatcc 1103
Query: 541 gatgtcgtcaattcgggttctgattattgcgttagatcgtttcttgctaaatctgctggc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 gatgtcgtcaattcgggttctgattattgcgttagatcgtttcttgctaaatctgctggc 1163
Query: 601 attcagactgttgttttggttcctactgatcttggtgttgttgagttaggctcaacttca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 attcagactgttgttttggttcctactgatcttggtgttgttgagttaggctcaacttca 1223
Query: 661 tgtttgcctgaaagtgaagactcaatcttgtctataagatcattgtttaccagtagtttg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1224 tgtttgcctgaaagtgaagactcaatcttgtctataagatcattgtttaccagtagtttg 1283
Query: 721 cctccggttagagctgttgctttacctgttactgtagctgaaaagattgatgataacaga 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1284 cctccggttagagctgttgctttacctgttactgtagctgaaaagattgatgataacaga 1343
Query: 781 acgaagatattcggcaaggatttgcacaattcagggtttcttcaacatcatcagcatcac 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1344 acgaagatattcggcaaggatttgcacaattcagggtttcttcaacatcatcagcatcac 1403
Query: 841 caacaacaacaacaacaaccaccgcaacagcaacagcatagacagtttagagagaaactc 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1404 caacaacaacaacaacaaccaccgcaacagcaacagcatagacagtttagagagaaactc 1463
Query: 901 acggttagaaaaatggatgatagagctcccaagagattagatgcttatccgaataatggg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1464 acggttagaaaaatggatgatagagctcccaagagattagatgcttatccgaataatggg 1523
Query: 961 aacaggtttatgttttcgaacccaggcaccaacaacaacactcttctgagtcctacttgg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1524 aacaggtttatgttttcgaacccaggcaccaacaacaacactcttctgagtcctacttgg 1583
Query: 1021 gttcaacctgagaactacacgaggccaatcaacgtgaaggaagttccaagcacggatgag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1584 gttcaacctgagaactacacgaggccaatcaacgtgaaggaagttccaagcacggatgag 1643
Query: 1081 ttcaagtttttacctttgcagcaatcatcgcagaggctgcttcctcctgctcaaatgcag 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1644 ttcaagtttttacctttgcagcaatcatcgcagaggctgcttcctcctgctcaaatgcag 1703
Query: 1141 atagatttctctgctgcgagttcaagggcttcagagaataattcagatggagaaggagga 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1704 atagatttctctgctgcgagttcaagggcttcagagaataattcagatggagaaggagga 1763
Query: 1201 ggggaatgggcagatgcagtgggtgctgatgaatctggtaacaacagaccaagaaaacgc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1764 ggggaatgggcagatgcagtgggtgctgatgaatctggtaacaacagaccaagaaaacgc 1823
Query: 1261 ggaaggagacctgccaacggaagagcggaagctttgaaccatgtagaagcagagaggcag 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1824 ggaaggagacctgccaacggaagagcggaagctttgaaccatgtagaagcagagaggcag 1883
Query: 1321 aggcgtgagaagcttaaccagaggttttacgctctgagatccgttgttcccaacatatcc 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1884 aggcgtgagaagcttaaccagaggttttacgctctgagatccgttgttcccaacatatcc 1943
Query: 1381 aagatggacaaagcgtccttgttgggagacgcggtttcttatataaacgagcttcacgcg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1944 aagatggacaaagcgtccttgttgggagacgcggtttcttatataaacgagcttcacgcg 2003
Query: 1441 aagctaaaggtcatggaagcagagagagagaggttagggtatagctcaaatccacctatc 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2004 aagctaaaggtcatggaagcagagagagagaggttagggtatagctcaaatccacctatc 2063
Query: 1501 agcttggattcagatataaatgttcaaacctcaggtgaagatgtcacagtgaggataaac 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2064 agcttggattcagatataaatgttcaaacctcaggtgaagatgtcacagtgaggataaac 2123
Query: 1561 tgtccgttggagtctcatccggcttccagaatcttccatgcgtttgaagagagtaaagta 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2124 tgtccgttggagtctcatccggcttccagaatcttccatgcgtttgaagagagtaaagta 2183
Query: 1621 gaagtgataaactcgaacctggaagtttctcaggacacagtgttgcatacgtttgtagtc 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2184 gaagtgataaactcgaacctggaagtttctcaggacacagtgttgcatacgtttgtagtc 2243
Query: 1681 aaatctgaagaattaacgaaagagaagctgatatcggccttgtctagagagcaaacaaat 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2244 aaatctgaagaattaacgaaagagaagctgatatcggccttgtctagagagcaaacaaat 2303
Query: 1741 tcagttcagtcaagaacatcatcaggtagatag 1773
|||||||||||||||||||||||||||||||||
Sbjct: 2304 tcagttcagtcaagaacatcatcaggtagatag 2336
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 2363
Score = 75.8 bits (38), Expect = 1e-12
Identities = 83/98 (84%)
Strand = Plus / Plus
Query: 1294 ttgaaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgct 1353
||||||||||| ||||| ||||||||||| || |||||||||||||| || || ||||||
Sbjct: 1608 ttgaaccatgtggaagctgagaggcagagacgcgagaagcttaaccaaagattctacgct 1667
Query: 1354 ctgagatccgttgttcccaacatatccaagatggacaa 1391
| |||| |||||||| ||||| || || ||||||||
Sbjct: 1668 ttacgatcagttgttccaaacatttctaaaatggacaa 1705
Score = 44.1 bits (22), Expect = 0.004
Identities = 102/126 (80%), Gaps = 2/126 (1%)
Strand = Plus / Plus
Query: 351 tatgagaaagagagtattgcaaaagcttcatgatttgtttggtggctcagaagaagagaa 410
|||||| |||||||| ||||| ||||||||| ||||||||||| || || ||||| ||
Sbjct: 788 tatgaggaagagagtgttgcagaagcttcataggttgtttggtggatctgatgaagacaa 847
Query: 411 ctgtgctttaggactagatagagttactgacactgagatgtttcttctt-tcttctatgt 469
| |||||| | |||| | |||||||| |||||||| ||||||||| |||| ||||
Sbjct: 848 ttatgctttgagcttagagaaagttactgctactgagat-tttcttcttagcttccatgt 906
Query: 470 atttct 475
||||||
Sbjct: 907 atttct 912
Score = 38.2 bits (19), Expect = 0.25
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 196 tggaactacgccattttctggca 218
||||||||||| |||||||||||
Sbjct: 624 tggaactacgctattttctggca 646
Score = 34.2 bits (17), Expect = 3.9
Identities = 26/29 (89%)
Strand = Plus / Plus
Query: 617 tggttcctactgatcttggtgttgttgag 645
|||||||||||||| ||||||| |||||
Sbjct: 1054 tggttcctactgatgctggtgttcttgag 1082
>At5g46830.1 68418.m05769 basic helix-loop-helix (bHLH) family protein
Length = 1536
Score = 67.9 bits (34), Expect = 3e-10
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 1292 ctttgaaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacg 1351
|||||||||| || |||||||||||| ||| ||||||||||| ||||| || || ||||
Sbjct: 1022 ctttgaaccacgtggaagcagagaggatgagacgtgagaagctaaaccacagattctacg 1081
Query: 1352 ctctgagatccgttgttcccaacatatccaagatggacaaagcgtccttgttgggagacg 1411
| | || | ||||| || ||| |||| || ||||||||| |||| ||| | | |||||
Sbjct: 1082 cattacgagcggttgtaccaaacgtatcgaaaatggacaaaacgtcgttgctcgaagacg 1141
Query: 1412 cggtttcttatataaacgagct 1433
|||||| ||| |||||||||||
Sbjct: 1142 cggtttgttacataaacgagct 1163
>At4g16430.1 68417.m02487 basic helix-loop-helix (bHLH) family protein contains
Pfam profile: PF00010 helix-loop-helix DNA-binding domain
Length = 1798
Score = 61.9 bits (31), Expect = 2e-08
Identities = 79/95 (83%)
Strand = Plus / Plus
Query: 1297 aaccatgtagaagcagagaggcagaggcgtgagaagcttaaccagaggttttacgctctg 1356
|||||||| ||||| || |||||||| | |||||||| |||||||| || |||||| ||
Sbjct: 1176 aaccatgtggaagcggaacggcagaggagggagaagctgaaccagagattctacgctttg 1235
Query: 1357 agatccgttgttcccaacatatccaagatggacaa 1391
||| | || || || ||||| ||||||||||||||
Sbjct: 1236 agagcggtggtgcctaacatctccaagatggacaa 1270
>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) identical to FUSCA3
GB:AAC35247 [Arabidopsis thaliana] (Plant J. 6, 379-387
(1994))
Length = 1380
Score = 60.0 bits (30), Expect = 7e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 841 caacaacaacaacaacaaccaccgcaacagcaacagca 878
||||||||||||||||||| || |||||||||||||||
Sbjct: 937 caacaacaacaacaacaacaacagcaacagcaacagca 974
Score = 46.1 bits (23), Expect = 0.001
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 841 caacaacaacaacaacaaccaccgcaacagcaaca 875
||||||||||||||||| | || ||||||||||||
Sbjct: 943 caacaacaacaacaacagcaacagcaacagcaaca 977
Score = 42.1 bits (21), Expect = 0.016
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 846 acaacaacaacaaccaccgcaacagcaacagca 878
|||||||||||||| || ||||||||||||||
Sbjct: 936 acaacaacaacaacaacaacaacagcaacagca 968
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,984
Number of Sequences: 29161
Number of extensions: 87984
Number of successful extensions: 4559
Number of sequences better than 10.0: 392
length of query: 1773
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1755
effective length of database: 43,533,334
effective search space: 76401001170
effective search space used: 76401001170
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)