BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= At1g01180.F
(1437 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01180.1 68414.m00030 expressed protein 2849 0.0
At2g42450.1 68415.m05252 lipase class 3 family protein simi... 42 0.013
At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-con... 36 0.80
At1g45110.1 68414.m05171 tetrapyrrole methylase family prot... 36 0.80
At5g44440.1 68418.m05446 FAD-binding domain-containing prot... 34 3.1
>At1g01180.1 68414.m00030 expressed protein
Length = 1437
Score = 2849 bits (1437), Expect = 0.0
Identities = 1437/1437 (100%)
Strand = Plus / Plus
Query: 1 atgaaggaggatcgtcgtcttcctcacaaacgcgacgccttccaattcttgaaaaccaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaggaggatcgtcgtcttcctcacaaacgcgacgccttccaattcttgaaaaccaag 60
Query: 61 gctgcgtacgttatcgtcatagttctaacctacgcctttggttacttctccgcctaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgcgtacgttatcgtcatagttctaacctacgcctttggttacttctccgcctaccac 120
Query: 121 tatcatcaaccgctgcagcagcagctgccaccgtctacgacagccgtggaaacgacaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatcatcaaccgctgcagcagcagctgccaccgtctacgacagccgtggaaacgacaaaa 180
Query: 181 cctcaagtttgttcaatcgacaacttccgagttacgactccatgcggcaatcttgttccg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcaagtttgttcaatcgacaacttccgagttacgactccatgcggcaatcttgttccg 240
Query: 241 ccggaattgattcgccagactgttattgaccggatctttaacggaacttctccgtacatc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccggaattgattcgccagactgttattgaccggatctttaacggaacttctccgtacatc 300
Query: 301 gatttcccaccaccgcacgccaagaagtttctccggccaaaaagaatcaaaggttgggga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatttcccaccaccgcacgccaagaagtttctccggccaaaaagaatcaaaggttgggga 360
Query: 361 tcatacggggccgttttcgagaatctaatccgccgagtcaaacctaagacgatcgtcgaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcatacggggccgttttcgagaatctaatccgccgagtcaaacctaagacgatcgtcgaa 420
Query: 421 gtcgggagttttctcggcgcgtcggcgatacacatggcgaatctcacgcgccgacttggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gtcgggagttttctcggcgcgtcggcgatacacatggcgaatctcacgcgccgacttggg 480
Query: 481 ctcgaggagactcagattctatgcgtcgacgacttccgtggctggcccggttttcgagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ctcgaggagactcagattctatgcgtcgacgacttccgtggctggcccggttttcgagac 540
Query: 541 cggtttaaggacatggctttggttaacggtgacgttctgcttatgtaccagtttatgcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 cggtttaaggacatggctttggttaacggtgacgttctgcttatgtaccagtttatgcaa 600
Query: 601 aacgtggttatctcggatttttccggttcgatattgccggttcctttctcgaccggttcg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aacgtggttatctcggatttttccggttcgatattgccggttcctttctcgaccggttcg 660
Query: 661 gctttggagaagctgtgtgagtggggagtgacggcggacctggtggagatagacgcgggt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gctttggagaagctgtgtgagtggggagtgacggcggacctggtggagatagacgcgggt 720
Query: 721 cacgattttaattcggcatgggcggatataaaccgggcggttcggatactccgacccggc 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cacgattttaattcggcatgggcggatataaaccgggcggttcggatactccgacccggc 780
Query: 781 ggtgttatatttggtcacgattatttcacggcggcggataatagaggagtgaggagagcc 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ggtgttatatttggtcacgattatttcacggcggcggataatagaggagtgaggagagcc 840
Query: 841 gtgaatctgttcgcagagattaaccggttaaaggtcaaaaccgatggtcaacattgggtt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gtgaatctgttcgcagagattaaccggttaaaggtcaaaaccgatggtcaacattgggtt 900
Query: 901 attgattcggtcaaagtaattaataaagggacaagatttgcgatctcaaaaactgttgcg 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 attgattcggtcaaagtaattaataaagggacaagatttgcgatctcaaaaactgttgcg 960
Query: 961 aagattaaagaggatgccaatcaatggttctttgctcaagttcttgagaatcaggatttg 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 aagattaaagaggatgccaatcaatggttctttgctcaagttcttgagaatcaggatttg 1020
Query: 1021 gtgaatgagcaagctgttcacatttcggttaaggtgctgcgcgggtttttgagagatgaa 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gtgaatgagcaagctgttcacatttcggttaaggtgctgcgcgggtttttgagagatgaa 1080
Query: 1081 cacggtaaggtcctaattcatgctagaagatcttttgcatctgttcatagcaagcttgat 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cacggtaaggtcctaattcatgctagaagatcttttgcatctgttcatagcaagcttgat 1140
Query: 1141 gctacttttctttgttggcaatgggccatggagagtatgaaaagtctcagagttgataaa 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 gctacttttctttgttggcaatgggccatggagagtatgaaaagtctcagagttgataaa 1200
Query: 1201 atcatctttgcctctgaagacaatgatctaattggagctgttacgcgactgccgtcttgg 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 atcatctttgcctctgaagacaatgatctaattggagctgttacgcgactgccgtcttgg 1260
Query: 1261 ccttcgtataaatttcagattcactttttgttgggagaattaataagaagctctaatctt 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 ccttcgtataaatttcagattcactttttgttgggagaattaataagaagctctaatctt 1320
Query: 1321 ggagctcatcttattgccaagagcgtgacaatggaggatcgccgccaatcgtatgtagca 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 ggagctcatcttattgccaagagcgtgacaatggaggatcgccgccaatcgtatgtagca 1380
Query: 1381 accgggtttcctttttggctgaaacatctttttgagaaagaaagaagtattgcttag 1437
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 accgggtttcctttttggctgaaacatctttttgagaaagaaagaagtattgcttag 1437
>At2g42450.1 68415.m05252 lipase class 3 family protein similar to
calmodulin-binding heat-shock protein CaMBP [Nicotiana
tabacum] GI:1087073; contains Pfam profile PF01764:
Lipase, PF03893: Lipase 3 N-terminal region
Length = 1978
Score = 42.1 bits (21), Expect = 0.013
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 328 tttctccggccaaaaagaatc 348
|||||||||||||||||||||
Sbjct: 146 tttctccggccaaaaagaatc 126
>At3g03580.1 68416.m00361 pentatricopeptide (PPR) repeat-containing protein
contains INTERPRO:IPR002885 PPR repeats
Length = 2841
Score = 36.2 bits (18), Expect = 0.80
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 326 agtttctccggccaaaaa 343
||||||||||||||||||
Sbjct: 201 agtttctccggccaaaaa 218
>At1g45110.1 68414.m05171 tetrapyrrole methylase family protein contains Pfam
PF00590 : Tetrapyrrole (Corrin/Porphyrin) Methylases
domain; contains TIGRFAMS TIGR00522 : diphthine synthase
Length = 1316
Score = 36.2 bits (18), Expect = 0.80
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1413 tgagaaagaaagaagtat 1430
||||||||||||||||||
Sbjct: 985 tgagaaagaaagaagtat 1002
>At5g44440.1 68418.m05446 FAD-binding domain-containing protein similar to
SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 1756
Score = 34.2 bits (17), Expect = 3.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1198 aaaatcatctttgcctctgaa 1218
|||||||||||||||| ||||
Sbjct: 1130 aaaatcatctttgcctttgaa 1110
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 40,806
Number of Sequences: 29161
Number of extensions: 40806
Number of successful extensions: 947
Number of sequences better than 10.0: 19
length of query: 1437
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1419
effective length of database: 43,533,334
effective search space: 61773800946
effective search space used: 61773800946
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)