BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AU236273_RAFL14_83_E11.f
(496 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01180.1 68414.m00030 expressed protein 670 0.0
At5g15690.1 68418.m01835 hypothetical protein very low simi... 34 1.1
At4g04780.1 68417.m00700 expressed protein very low similar... 34 1.1
At3g15220.1 68416.m01923 protein kinase, putative similar t... 34 1.1
At3g07510.1 68416.m00895 expressed protein 34 1.1
>At1g01180.1 68414.m00030 expressed protein
Length = 1437
Score = 670 bits (338), Expect = 0.0
Identities = 338/338 (100%)
Strand = Plus / Plus
Query: 33 atgaaggaggatcgtcgtcttcctcacaaacgcgacgccttccaattcttgaaaaccaag 92
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgaaggaggatcgtcgtcttcctcacaaacgcgacgccttccaattcttgaaaaccaag 60
Query: 93 gctgcgtacgttatcgtcatagttctaacctacgcctttggttacttctccgcctaccac 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgcgtacgttatcgtcatagttctaacctacgcctttggttacttctccgcctaccac 120
Query: 153 tatcatcaaccgctgcagcagcagctgccaccgtctacgacagccgtggaaacgacaaaa 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tatcatcaaccgctgcagcagcagctgccaccgtctacgacagccgtggaaacgacaaaa 180
Query: 213 cctcaagtttgttcaatcgacaacttccgagttacgactccatgcggcaatcttgttccg 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cctcaagtttgttcaatcgacaacttccgagttacgactccatgcggcaatcttgttccg 240
Query: 273 ccggaattgattcgccagactgttattgaccggatctttaacggaacttctccgtacatc 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ccggaattgattcgccagactgttattgaccggatctttaacggaacttctccgtacatc 300
Query: 333 gatttcccaccaccgcacgccaagaagtttctccggcc 370
||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gatttcccaccaccgcacgccaagaagtttctccggcc 338
Score = 182 bits (92), Expect = 2e-45
Identities = 102/104 (98%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 368 gccgagtcaaacctaagacgatcgtcgaagtcgggagttttctcggcgcatcggcgatac 427
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 392 gccgagtcaaacctaagacgatcgtcgaagtcgggagttttctcggcgcgtcggcgatac 451
Query: 428 acatggcgaatctcacgcgccgactttgggctcgaggagactca 471
|||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 452 acatggcgaatctcacgcgccgac-ttgggctcgaggagactca 494
>At5g15690.1 68418.m01835 hypothetical protein very low similarity to MtN20
[Medicago truncatula] GI:2598591
Length = 510
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 25 tcttgaccatgaaggag 41
|||||||||||||||||
Sbjct: 362 tcttgaccatgaaggag 378
>At4g04780.1 68417.m00700 expressed protein very low similarity to SP|Q13503 RNA
polymerase II holoenzyme component SRB7 (RNAPII complex
component SRB7) {Homo sapiens}
Length = 1252
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 25 tcttgaccatgaaggag 41
|||||||||||||||||
Sbjct: 362 tcttgaccatgaaggag 378
>At3g15220.1 68416.m01923 protein kinase, putative similar to serine/threonine
protein kinase 24 [Homo sapiens] SWISS-PROT:Q9Y6E
Length = 2573
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 350 cgccaagaagtttctcc 366
|||||||||||||||||
Sbjct: 1277 cgccaagaagtttctcc 1293
>At3g07510.1 68416.m00895 expressed protein
Length = 898
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 4 ttgattcttcattctcagaaa 24
|||||||||||||||| ||||
Sbjct: 813 ttgattcttcattctccgaaa 793
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,191
Number of Sequences: 29161
Number of extensions: 13191
Number of successful extensions: 999
Number of sequences better than 10.0: 32
length of query: 496
length of database: 44,058,232
effective HSP length: 17
effective length of query: 479
effective length of database: 43,562,495
effective search space: 20866435105
effective search space used: 20866435105
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)