BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AU227148_RAFL14_83_E11.r
         (437 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01180.1  68414.m00030 expressed protein                       632   0.0  
At3g24610.1  68416.m03091 kelch repeat-containing F-box fami...    38   0.060
At2g22905.1  68415.m02719 Expressed protein                        36   0.24 
At1g64180.1  68414.m07270 intracellular protein transport pr...    34   0.93 
At1g27500.1  68414.m03352 kinesin light chain-related low si...    34   0.93 

>At1g01180.1 68414.m00030 expressed protein
          Length = 1437

 Score =  632 bits (319), Expect = 0.0
 Identities = 339/343 (98%), Gaps = 2/343 (0%)
 Strand = Plus / Minus

                                                                       
Query: 96  ttactttgaccgaatcaataacccaatgttgaccatcggttttgacctttaaccggttaa 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 919 ttactttgaccgaatcaataacccaatgttgaccatcggttttgacctttaaccggttaa 860

                                                                       
Query: 156 tctctgcgaacagattcacggctctcctcactcctctattatccggcgccgtgaaataat 215
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 859 tctctgcgaacagattcacggctctcctcactcctctattatccgccgccgtgaaataat 800

                                                                       
Query: 216 cgtgaccaaatataacaccgccgggtcggagtatc-gaaccgcccggtttatatccgccc 274
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 799 cgtgaccaaatataacaccgccgggtcggagtatccgaaccgcccggtttatatccgccc 740

                                                                       
Query: 275 atgccgaattaaaatcgtgacccgggtctatctccaccaggtccgccgtcactccccact 334
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 739 atgccgaattaaaatcgtgacccgcgtctatctccaccaggtccgccgtcactccccact 680

                                                                       
Query: 335 cacacagcttctccaaagccgaaccggtcgagaaaggaaccggcaatatcgaaccggaaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 cacacagcttctccaaagccgaaccggtcgagaaaggaaccggcaatatcgaaccggaaa 620

                                                      
Query: 395 aatccgagataaccacgttttgcataaacctggtacataagca 437
           |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 619 aatccgagataaccacgttttgcataaa-ctggtacataagca 578



>At3g24610.1 68416.m03091 kelch repeat-containing F-box family protein contains
           Pfam profiles PF01344: Kelch motif, PF00646: F-box
           domain
          Length = 1338

 Score = 38.2 bits (19), Expect = 0.060
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 75  tatgggaaaaagggaatca 93
           |||||||||||||||||||
Sbjct: 800 tatgggaaaaagggaatca 818



>At2g22905.1 68415.m02719 Expressed protein
          Length = 772

 Score = 36.2 bits (18), Expect = 0.24
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                
Query: 30 attacacattttcttattattt 51
          ||||||||||||||||| ||||
Sbjct: 16 attacacattttcttataattt 37



>At1g64180.1 68414.m07270 intracellular protein transport protein USO1-related
            similar to Rap8 (GI:2326183) [Rhynchosciara americana];
            contains weak similarity to Swiss-Prot:P25386
            intracellular protein transport protein USO1
            [Saccharomyces cerevisiae]
          Length = 2072

 Score = 34.2 bits (17), Expect = 0.93
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 340  agcttctccaaagccga 356
            |||||||||||||||||
Sbjct: 1251 agcttctccaaagccga 1235



>At1g27500.1 68414.m03352 kinesin light chain-related low similarity to kinesin
            light chain [Plectonema boryanum] GI:2645229; contains
            Pfam profile PF00515 TPR Domain
          Length = 2264

 Score = 34.2 bits (17), Expect = 0.93
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 35   acattttcttattattt 51
            |||||||||||||||||
Sbjct: 2096 acattttcttattattt 2112



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9538
Number of Sequences: 29161
Number of extensions: 9538
Number of successful extensions: 676
Number of sequences better than 10.0: 21
length of query: 437
length of database: 44,058,232
effective HSP length: 17
effective length of query: 420
effective length of database: 43,562,495
effective search space: 18296247900
effective search space used: 18296247900
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)