BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.12.C1
         (737 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01170.1  68414.m00028 ozone-responsive stress-related pr...   860   0.0  
At5g35630.1  68418.m04253 glutamine synthetase (GS2) identic...   208   5e-53
At1g01160.1  68414.m00026 SSXT protein-related / transcripti...   208   5e-53
At4g00860.1  68417.m00117 stress-related ozone-induced prote...   107   1e-22
At5g16570.1  68418.m01939 glutamine synthetase, putative sim...    68   1e-10
>At1g01170.1 68414.m00028 ozone-responsive stress-related protein, putative
           similar to stress-related ozone-induced protein AtOZI1
           (GI:790583) [Arabidopsis thaliana]; contains 1 predicted
           transmembrane domain;
          Length = 609

 Score =  860 bits (434), Expect = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Plus

                                                                       
Query: 28  aattcttctggaactggagtccactgtttaagcttcactgtctctgaatcggcaaagctt 87
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8   aattcttctggaactggagtccactgtttaagcttcactgtctctgaatcggcaaagctt 67

                                                                       
Query: 88  tagaagaaaatggcatcaggaggtaaagccaagtacataatcggtgctctcatcggttct 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tagaagaaaatggcatcaggaggtaaagccaagtacataatcggtgctctcatcggttct 127

                                                                       
Query: 148 ttcggaatctcatacatcttcgacaaagttatctctgataataagatctttggagggact 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttcggaatctcatacatcttcgacaaagttatctctgataataagatctttggagggact 187

                                                                       
Query: 208 actccaggaactgtctctaacaaagaatggtgggcagcaacggatgagaaattccaagca 267
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 actccaggaactgtctctaacaaagaatggtgggcagcaacggatgagaaattccaagca 247

                                                                       
Query: 268 tggccaagaaccgctggtcctcccgttgttatgaatcccattagccgtcagaatttcatc 327
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggccaagaaccgctggtcctcccgttgttatgaatcccattagccgtcagaatttcatc 307

                                                                       
Query: 328 gtcaagactcgtccggaatgagaaaataataagttcaatgctttgattttcagaataaga 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtcaagactcgtccggaatgagaaaataataagttcaatgctttgattttcagaataaga 367

                                                                       
Query: 388 tgaacgatgacgatgttttctaaatccgagcttgtactaaataacaatacattacaacac 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgaacgatgacgatgttttctaaatccgagcttgtactaaataacaatacattacaacac 427

                         
Query: 448 ggtttgcggaacta 461
           ||||||||||||||
Sbjct: 428 ggtttgcggaacta 441
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to glutamine
            synthetase, chloroplast precursor (glutamate-- ammonia
            ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
          Length = 1642

 Score =  208 bits (105), Expect = 5e-53
 Identities = 105/105 (100%)
 Strand = Plus / Plus

                                                                        
Query: 494  ggtctctcaagttgtttaaacattcggattaagacattgtttgttgtcttttcatttgca 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ggtctctcaagttgtttaaacattcggattaagacattgtttgttgtcttttcatttgca 1536

                                                         
Query: 554  tttttaaaactcagaattgtatggacaatgttcatccttttatat 598
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tttttaaaactcagaattgtatggacaatgttcatccttttatat 1581

 Score =  167 bits (84), Expect = 2e-40
 Identities = 84/84 (100%)
 Strand = Plus / Minus

                                                                       
Query: 601 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 854

                                   
Query: 661 tataaacaagctttgtaatgagca 684
           ||||||||||||||||||||||||
Sbjct: 853 tataaacaagctttgtaatgagca 830

 Score = 46.1 bits (23), Expect = 4e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 683  caatgttcatccttttatattgg 705
            |||||||||||||||||||||||
Sbjct: 1562 caatgttcatccttttatattgg 1584
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
            co-activator-related similar to SYT/SSX4 fusion protein
            (GI:11127695) [Homo sapiens]; supporting cDNA
            gi|21539891|gb|AY102640.1|; contains Pfam profile
            PF05030: SSXT protein (N-terminal region)
          Length = 1027

 Score =  208 bits (105), Expect = 5e-53
 Identities = 105/105 (100%)
 Strand = Plus / Minus

                                                                        
Query: 357  taagttcaatgctttgattttcagaataagatgaacgatgacgatgttttctaaatccga 416
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 taagttcaatgctttgattttcagaataagatgaacgatgacgatgttttctaaatccga 968

                                                         
Query: 417  gcttgtactaaataacaatacattacaacacggtttgcggaacta 461
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967  gcttgtactaaataacaatacattacaacacggtttgcggaacta 923
>At4g00860.1 68417.m00117 stress-related ozone-induced protein (OZI1) /
           stress-related ozone-responsive protein identical to
           stress-related ozone-induced protein AtOZI1 (mRNA
           corresponding to this gene accumulates in response to
           ozone stress and pathogen (bacterial) infection);
           putative pathogenesis-related protein (GI:790583)
           [Arabidopsis thaliana]
          Length = 596

 Score =  107 bits (54), Expect = 1e-22
 Identities = 147/178 (82%)
 Strand = Plus / Plus

                                                                       
Query: 169 gacaaagttatctctgataataagatctttggagggactactccaggaactgtctctaac 228
           ||||||||||| |||||| ||||| | |||||||| ||||| ||||||||| |  |||||
Sbjct: 184 gacaaagttatttctgatgataagctttttggaggtactacaccaggaactattactaac 243

                                                                       
Query: 229 aaagaatggtgggcagcaacggatgagaaattccaagcatggccaagaaccgctggtcct 288
           || |||||| | || || || || |||| ||| |||||||||||||||   |||||||||
Sbjct: 244 aaggaatggggtgctgcgactgaagagagattacaagcatggccaagagttgctggtcct 303

                                                                     
Query: 289 cccgttgttatgaatcccattagccgtcagaatttcatcgtcaagactcgtccggaat 346
           ||||| || ||||| || || || || |||||||||||||||||| | ||||| ||||
Sbjct: 304 cccgtcgtcatgaaccctatcagtcgccagaatttcatcgtcaagtcacgtcctgaat 361
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to glutamine
           synthetase, cytosolic isozyme (glutamate-- ammonia
           ligase) [Alfalfa] SWISS-PROT:P04078
          Length = 1269

 Score = 67.9 bits (34), Expect = 1e-10
 Identities = 70/82 (85%)
 Strand = Plus / Minus

                                                                       
Query: 601 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 660
           |||||||||||||| |||||||||||||| || ||||| ||||| |  || ||||| || 
Sbjct: 645 tggaactcccactggccaggcataacttcgccgttagtcccactgacattgattccggcg 586

                                 
Query: 661 tataaacaagctttgtaatgag 682
           || | |||||||||||||||||
Sbjct: 585 taaagacaagctttgtaatgag 564
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,815
Number of Sequences: 29161
Number of extensions: 56815
Number of successful extensions: 10259
Number of sequences better than 10.0: 432
length of query: 737
length of database: 44,058,232
effective HSP length: 17
effective length of query: 720
effective length of database: 43,562,495
effective search space: 31364996400
effective search space used: 31364996400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)