BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.12.C1
(737 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01170.1 68414.m00028 ozone-responsive stress-related pr... 860 0.0
At5g35630.1 68418.m04253 glutamine synthetase (GS2) identic... 208 5e-53
At1g01160.1 68414.m00026 SSXT protein-related / transcripti... 208 5e-53
At4g00860.1 68417.m00117 stress-related ozone-induced prote... 107 1e-22
At5g16570.1 68418.m01939 glutamine synthetase, putative sim... 68 1e-10
>At1g01170.1 68414.m00028 ozone-responsive stress-related protein, putative
similar to stress-related ozone-induced protein AtOZI1
(GI:790583) [Arabidopsis thaliana]; contains 1 predicted
transmembrane domain;
Length = 609
Score = 860 bits (434), Expect = 0.0
Identities = 434/434 (100%)
Strand = Plus / Plus
Query: 28 aattcttctggaactggagtccactgtttaagcttcactgtctctgaatcggcaaagctt 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 aattcttctggaactggagtccactgtttaagcttcactgtctctgaatcggcaaagctt 67
Query: 88 tagaagaaaatggcatcaggaggtaaagccaagtacataatcggtgctctcatcggttct 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tagaagaaaatggcatcaggaggtaaagccaagtacataatcggtgctctcatcggttct 127
Query: 148 ttcggaatctcatacatcttcgacaaagttatctctgataataagatctttggagggact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 ttcggaatctcatacatcttcgacaaagttatctctgataataagatctttggagggact 187
Query: 208 actccaggaactgtctctaacaaagaatggtgggcagcaacggatgagaaattccaagca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 actccaggaactgtctctaacaaagaatggtgggcagcaacggatgagaaattccaagca 247
Query: 268 tggccaagaaccgctggtcctcccgttgttatgaatcccattagccgtcagaatttcatc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tggccaagaaccgctggtcctcccgttgttatgaatcccattagccgtcagaatttcatc 307
Query: 328 gtcaagactcgtccggaatgagaaaataataagttcaatgctttgattttcagaataaga 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtcaagactcgtccggaatgagaaaataataagttcaatgctttgattttcagaataaga 367
Query: 388 tgaacgatgacgatgttttctaaatccgagcttgtactaaataacaatacattacaacac 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tgaacgatgacgatgttttctaaatccgagcttgtactaaataacaatacattacaacac 427
Query: 448 ggtttgcggaacta 461
||||||||||||||
Sbjct: 428 ggtttgcggaacta 441
>At5g35630.1 68418.m04253 glutamine synthetase (GS2) identical to glutamine
synthetase, chloroplast precursor (glutamate-- ammonia
ligase, GS2) [Arabidopsis thaliana] SWISS-PROT:Q43127
Length = 1642
Score = 208 bits (105), Expect = 5e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 494 ggtctctcaagttgtttaaacattcggattaagacattgtttgttgtcttttcatttgca 553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1477 ggtctctcaagttgtttaaacattcggattaagacattgtttgttgtcttttcatttgca 1536
Query: 554 tttttaaaactcagaattgtatggacaatgttcatccttttatat 598
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1537 tttttaaaactcagaattgtatggacaatgttcatccttttatat 1581
Score = 167 bits (84), Expect = 2e-40
Identities = 84/84 (100%)
Strand = Plus / Minus
Query: 601 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 913 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 854
Query: 661 tataaacaagctttgtaatgagca 684
||||||||||||||||||||||||
Sbjct: 853 tataaacaagctttgtaatgagca 830
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 683 caatgttcatccttttatattgg 705
|||||||||||||||||||||||
Sbjct: 1562 caatgttcatccttttatattgg 1584
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
co-activator-related similar to SYT/SSX4 fusion protein
(GI:11127695) [Homo sapiens]; supporting cDNA
gi|21539891|gb|AY102640.1|; contains Pfam profile
PF05030: SSXT protein (N-terminal region)
Length = 1027
Score = 208 bits (105), Expect = 5e-53
Identities = 105/105 (100%)
Strand = Plus / Minus
Query: 357 taagttcaatgctttgattttcagaataagatgaacgatgacgatgttttctaaatccga 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 taagttcaatgctttgattttcagaataagatgaacgatgacgatgttttctaaatccga 968
Query: 417 gcttgtactaaataacaatacattacaacacggtttgcggaacta 461
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gcttgtactaaataacaatacattacaacacggtttgcggaacta 923
>At4g00860.1 68417.m00117 stress-related ozone-induced protein (OZI1) /
stress-related ozone-responsive protein identical to
stress-related ozone-induced protein AtOZI1 (mRNA
corresponding to this gene accumulates in response to
ozone stress and pathogen (bacterial) infection);
putative pathogenesis-related protein (GI:790583)
[Arabidopsis thaliana]
Length = 596
Score = 107 bits (54), Expect = 1e-22
Identities = 147/178 (82%)
Strand = Plus / Plus
Query: 169 gacaaagttatctctgataataagatctttggagggactactccaggaactgtctctaac 228
||||||||||| |||||| ||||| | |||||||| ||||| ||||||||| | |||||
Sbjct: 184 gacaaagttatttctgatgataagctttttggaggtactacaccaggaactattactaac 243
Query: 229 aaagaatggtgggcagcaacggatgagaaattccaagcatggccaagaaccgctggtcct 288
|| |||||| | || || || || |||| ||| ||||||||||||||| |||||||||
Sbjct: 244 aaggaatggggtgctgcgactgaagagagattacaagcatggccaagagttgctggtcct 303
Query: 289 cccgttgttatgaatcccattagccgtcagaatttcatcgtcaagactcgtccggaat 346
||||| || ||||| || || || || |||||||||||||||||| | ||||| ||||
Sbjct: 304 cccgtcgtcatgaaccctatcagtcgccagaatttcatcgtcaagtcacgtcctgaat 361
>At5g16570.1 68418.m01939 glutamine synthetase, putative similar to glutamine
synthetase, cytosolic isozyme (glutamate-- ammonia
ligase) [Alfalfa] SWISS-PROT:P04078
Length = 1269
Score = 67.9 bits (34), Expect = 1e-10
Identities = 70/82 (85%)
Strand = Plus / Minus
Query: 601 tggaactcccactgtccaggcataacttcaccattagtaccactaatgttaattccagca 660
|||||||||||||| |||||||||||||| || ||||| ||||| | || ||||| ||
Sbjct: 645 tggaactcccactggccaggcataacttcgccgttagtcccactgacattgattccggcg 586
Query: 661 tataaacaagctttgtaatgag 682
|| | |||||||||||||||||
Sbjct: 585 taaagacaagctttgtaatgag 564
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,815
Number of Sequences: 29161
Number of extensions: 56815
Number of successful extensions: 10259
Number of sequences better than 10.0: 432
length of query: 737
length of database: 44,058,232
effective HSP length: 17
effective length of query: 720
effective length of database: 43,562,495
effective search space: 31364996400
effective search space used: 31364996400
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)