BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.11.C1
(1004 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01160.1 68414.m00026 SSXT protein-related / transcripti... 1986 0.0
At1g01170.1 68414.m00028 ozone-responsive stress-related pr... 535 e-151
At4g00850.1 68417.m00116 SSXT family protein low similarity... 200 2e-50
At5g64920.1 68418.m08166 COP1-interacting protein (CIP8) / ... 40 0.035
At5g51560.1 68418.m06393 leucine-rich repeat transmembrane ... 38 0.14
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
co-activator-related similar to SYT/SSX4 fusion protein
(GI:11127695) [Homo sapiens]; supporting cDNA
gi|21539891|gb|AY102640.1|; contains Pfam profile
PF05030: SSXT protein (N-terminal region)
Length = 1027
Score = 1986 bits (1002), Expect = 0.0
Identities = 1002/1002 (100%)
Strand = Plus / Plus
Query: 1 tttggtcataaaatccacacagaggtggttcgacatccaggtgaatccaagtaataaatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23 tttggtcataaaatccacacagaggtggttcgacatccaggtgaatccaagtaataaatt 82
Query: 61 gcaggattctctctctataatatatatagatatagcttgcaatcatttcctgcgtttgga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 gcaggattctctctctataatatatatagatatagcttgcaatcatttcctgcgtttgga 142
Query: 121 tcggtctgggttttgtcgagggttttttggggaagacgaaattagggtttagttggggca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tcggtctgggttttgtcgagggttttttggggaagacgaaattagggtttagttggggca 202
Query: 181 aagtaagtagtaaagaagaagaagatgcagcagcagcagtctccgcaaatgtttccgatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aagtaagtagtaaagaagaagaagatgcagcagcagcagtctccgcaaatgtttccgatg 262
Query: 241 gttccgtcgattccccctgctaacaacatcactaccgaacagatccaaaagtaccttgat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 gttccgtcgattccccctgctaacaacatcactaccgaacagatccaaaagtaccttgat 322
Query: 301 gagaacaagaagctgattatggccatcatggaaaaccagaatctcggtaaacttgctgag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gagaacaagaagctgattatggccatcatggaaaaccagaatctcggtaaacttgctgag 382
Query: 361 tgcgcccagtaccaagctcttctccagaagaacttgatgtatcttgctgcaattgctgat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tgcgcccagtaccaagctcttctccagaagaacttgatgtatcttgctgcaattgctgat 442
Query: 421 gctcaacccccaccacctacgccaggaccttcaccatctacagctgtcgctgcccagatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gctcaacccccaccacctacgccaggaccttcaccatctacagctgtcgctgcccagatg 502
Query: 481 gcaacaccgcattctgggatgcaaccacctagctacttcatgcaacacccacaagcatcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcaacaccgcattctgggatgcaaccacctagctacttcatgcaacacccacaagcatcc 562
Query: 541 cctgcagggattttcgctccaaggggtcctttacagtttggtagcccactccagtttcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 cctgcagggattttcgctccaaggggtcctttacagtttggtagcccactccagtttcag 622
Query: 601 gatccgcaacagcagcagcagatacatcagcaagctatgcaaggacacatggggattaga 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gatccgcaacagcagcagcagatacatcagcaagctatgcaaggacacatggggattaga 682
Query: 661 ccaatgggtatgaccaacaacgggatgcagcatgcgatgcaacaaccagaaaccggtctt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ccaatgggtatgaccaacaacgggatgcagcatgcgatgcaacaaccagaaaccggtctt 742
Query: 721 ggaggaaacgtggggcttagaggaggaaagcaagatggagcagatggacaaggaaaagat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggaggaaacgtggggcttagaggaggaaagcaagatggagcagatggacaaggaaaagat 802
Query: 781 gatggcaagtgaaaaggatccaaagaagctttgttttgttgatatttaggacttgtgagt 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 gatggcaagtgaaaaggatccaaagaagctttgttttgttgatatttaggacttgtgagt 862
Query: 841 ctcgtaagggctttttgcaatagcttgtttgagttttttaacagaagatagactgtggag 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctcgtaagggctttttgcaatagcttgtttgagttttttaacagaagatagactgtggag 922
Query: 901 tagttccgcaaaccgtgttgtaatgtattgttatttagtacaagctcggatttagaaaac 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 tagttccgcaaaccgtgttgtaatgtattgttatttagtacaagctcggatttagaaaac 982
Query: 961 atcgtcatcgttcatcttattctgaaaatcaaagcattgaac 1002
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 atcgtcatcgttcatcttattctgaaaatcaaagcattgaac 1024
>At1g01170.1 68414.m00028 ozone-responsive stress-related protein, putative
similar to stress-related ozone-induced protein AtOZI1
(GI:790583) [Arabidopsis thaliana]; contains 1 predicted
transmembrane domain;
Length = 609
Score = 535 bits (270), Expect = e-151
Identities = 270/270 (100%)
Strand = Plus / Minus
Query: 733 gggcttagaggaggaaagcaagatggagcagatggacaaggaaaagatgatggcaagtga 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gggcttagaggaggaaagcaagatggagcagatggacaaggaaaagatgatggcaagtga 550
Query: 793 aaaggatccaaagaagctttgttttgttgatatttaggacttgtgagtctcgtaagggct 852
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaaggatccaaagaagctttgttttgttgatatttaggacttgtgagtctcgtaagggct 490
Query: 853 ttttgcaatagcttgtttgagttttttaacagaagatagactgtggagtagttccgcaaa 912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttgcaatagcttgtttgagttttttaacagaagatagactgtggagtagttccgcaaa 430
Query: 913 ccgtgttgtaatgtattgttatttagtacaagctcggatttagaaaacatcgtcatcgtt 972
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ccgtgttgtaatgtattgttatttagtacaagctcggatttagaaaacatcgtcatcgtt 370
Query: 973 catcttattctgaaaatcaaagcattgaac 1002
||||||||||||||||||||||||||||||
Sbjct: 369 catcttattctgaaaatcaaagcattgaac 340
>At4g00850.1 68417.m00116 SSXT family protein low similarity to synovial sarcoma
associated SS18-delta [Mus musculus] GI:17978535;
contains Pfam profile PF05030: SSXT protein (N-terminal
region)
Length = 1045
Score = 200 bits (101), Expect = 2e-50
Identities = 146/161 (90%)
Strand = Plus / Plus
Query: 268 atcactaccgaacagatccaaaagtaccttgatgagaacaagaagctgattatggccatc 327
||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||
Sbjct: 168 atcaccaccgaacagatccaaaagtatcttgatgagaacaagaagctgataatggcgatc 227
Query: 328 atggaaaaccagaatctcggtaaacttgctgagtgcgcccagtaccaagctcttctccag 387
||||||| ||||| |||||||||||||| || || || ||||| |||||||||||||||
Sbjct: 228 ttggaaaatcagaacctcggtaaacttgcagaatgtgctcagtatcaagctcttctccag 287
Query: 388 aagaacttgatgtatcttgctgcaattgctgatgctcaacc 428
||||| ||||||||||| ||||||||||| |||||||||||
Sbjct: 288 aagaatttgatgtatctcgctgcaattgcggatgctcaacc 328
Score = 87.7 bits (44), Expect = 2e-16
Identities = 103/123 (83%), Gaps = 6/123 (4%)
Strand = Plus / Plus
Query: 547 gggattttcgctccaaggggtcctttacagtttggtagcccactccagtttcaggatccg 606
||||||||| |||| || ||||| || || ||||||||||| | ||||||| |||||||
Sbjct: 468 gggattttccctcctagaggtccattgcaatttggtagcccgcatcagtttctggatccg 527
Query: 607 caacagcagcagcagatacatcagcaagctatgcaaggacacatggggattagaccaatg 666
|| ||| ||| ||||||| |||||||||||||| |||||||||||||||||||||
Sbjct: 528 ca------gcaacagttacatcaacaagctatgcaagggcacatggggattagaccaatg 581
Query: 667 ggt 669
|||
Sbjct: 582 ggt 584
Score = 34.2 bits (17), Expect = 2.2
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 504 accacctagctacttcatgca 524
|||||| ||||||||||||||
Sbjct: 407 accaccaagctacttcatgca 427
>At5g64920.1 68418.m08166 COP1-interacting protein (CIP8) / zinc finger
(C3HC4-type RING finger) family protein identical to
COP1-interacting protein CIP8 [Arabidopsis thaliana]
gi|5929906|gb|AAD56636; contains Pfam profile: PF00097
zinc finger, C3HC4 type
Length = 1555
Score = 40.1 bits (20), Expect = 0.035
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 193 aagaagaagaagatgcagcagcag 216
||||||||||||| ||||||||||
Sbjct: 1088 aagaagaagaagaagcagcagcag 1065
Score = 34.2 bits (17), Expect = 2.2
Identities = 23/25 (92%)
Strand = Plus / Minus
Query: 195 gaagaagaagatgcagcagcagcag 219
||||||||||| | |||||||||||
Sbjct: 1089 gaagaagaagaagaagcagcagcag 1065
>At5g51560.1 68418.m06393 leucine-rich repeat transmembrane protein kinase,
putative
Length = 2404
Score = 38.2 bits (19), Expect = 0.14
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 193 aagaagaagaagatgcagcagca 215
||||||||||||||| |||||||
Sbjct: 159 aagaagaagaagatgaagcagca 137
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,369
Number of Sequences: 29161
Number of extensions: 50369
Number of successful extensions: 2133
Number of sequences better than 10.0: 166
length of query: 1004
length of database: 44,058,232
effective HSP length: 18
effective length of query: 986
effective length of database: 43,533,334
effective search space: 42923867324
effective search space used: 42923867324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)