BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV821553_RAFL04_13_H03.f
         (364 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01160.1  68414.m00026 SSXT protein-related / transcripti...   577   e-164
At5g64920.1  68418.m08166 COP1-interacting protein (CIP8) / ...    40   0.012
At5g51560.1  68418.m06393 leucine-rich repeat transmembrane ...    38   0.049
At1g06900.1  68414.m00733 peptidase M16 family protein / ins...    38   0.049
At5g62500.1  68418.m07844 microtubule-associated EB1 family ...    36   0.19 
>At1g01160.1 68414.m00026 SSXT protein-related / transcription
           co-activator-related similar to SYT/SSX4 fusion protein
           (GI:11127695) [Homo sapiens]; supporting cDNA
           gi|21539891|gb|AY102640.1|; contains Pfam profile
           PF05030: SSXT protein (N-terminal region)
          Length = 1027

 Score =  577 bits (291), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   atttttggtcataaaatccacacagaggtggttcgacatccaggtgaatccaagtaataa 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  atttttggtcataaaatccacacagaggtggttcgacatccaggtgaatccaagtaataa 79

                                                                       
Query: 62  attgcaggattctctctctataatatatatagatatagcttgcaatcatttcctgcgttt 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  attgcaggattctctctctataatatatatagatatagcttgcaatcatttcctgcgttt 139

                                                                       
Query: 122 ggatcggtctgggttttgtcgagggttttttggggaagacgaaattagggtttagttggg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 ggatcggtctgggttttgtcgagggttttttggggaagacgaaattagggtttagttggg 199

                                                                       
Query: 182 gcaaagtaagtagtaaagaagaagaagatgcagcagcagcagtctccgcaaatgtttccg 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gcaaagtaagtagtaaagaagaagaagatgcagcagcagcagtctccgcaaatgtttccg 259

                                                                 
Query: 242 atggttccgtcgattccccctgctaacaacatnactaccgaacagatccaaaag 295
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 atggttccgtcgattccccctgctaacaacatcactaccgaacagatccaaaag 313
>At5g64920.1 68418.m08166 COP1-interacting protein (CIP8) / zinc finger
            (C3HC4-type RING finger) family protein identical to
            COP1-interacting protein CIP8 [Arabidopsis thaliana]
            gi|5929906|gb|AAD56636; contains Pfam profile: PF00097
            zinc finger, C3HC4 type
          Length = 1555

 Score = 40.1 bits (20), Expect = 0.012
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 197  aagaagaagaagatgcagcagcag 220
            ||||||||||||| ||||||||||
Sbjct: 1088 aagaagaagaagaagcagcagcag 1065

 Score = 34.2 bits (17), Expect = 0.77
 Identities = 23/25 (92%)
 Strand = Plus / Minus

                                     
Query: 199  gaagaagaagatgcagcagcagcag 223
            ||||||||||| | |||||||||||
Sbjct: 1089 gaagaagaagaagaagcagcagcag 1065
>At5g51560.1 68418.m06393 leucine-rich repeat transmembrane protein kinase,
           putative
          Length = 2404

 Score = 38.2 bits (19), Expect = 0.049
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 197 aagaagaagaagatgcagcagca 219
           ||||||||||||||| |||||||
Sbjct: 159 aagaagaagaagatgaagcagca 137
>At1g06900.1 68414.m00733 peptidase M16 family protein / insulinase family
           protein contains Pfam domain, PF05193: Peptidase M16
           inactive domain; similar to insulin-degrading enzyme
           (Insulysin, Insulinase, Insulin protease) [Mouse]
           SWISS-PROT:Q9JHR7
          Length = 3409

 Score = 38.2 bits (19), Expect = 0.049
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 197 aagaagaagaagatgcagcagcagcag 223
           ||||||| |||| ||||||||||||||
Sbjct: 42  aagaagaggaagctgcagcagcagcag 68
>At5g62500.1 68418.m07844 microtubule-associated EB1 family protein similar to
            EBF3-S (Microtubule-associated protein) [Homo sapiens]
            GI:12751131; contains Pfam profiles PF00307: Calponin
            homology (CH) domain, PF03271: EB1 protein
          Length = 1408

 Score = 36.2 bits (18), Expect = 0.19
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 197  aagaagaagaagatgcagcagc 218
            ||||||||||||| ||||||||
Sbjct: 1127 aagaagaagaagaagcagcagc 1148

 Score = 34.2 bits (17), Expect = 0.77
 Identities = 23/25 (92%)
 Strand = Plus / Plus

                                     
Query: 197  aagaagaagaagatgcagcagcagc 221
            ||||||||||||| | |||||||||
Sbjct: 1124 aagaagaagaagaagaagcagcagc 1148
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 27,979
Number of Sequences: 29161
Number of extensions: 27979
Number of successful extensions: 7084
Number of sequences better than 10.0: 133
length of query: 364
length of database: 44,058,232
effective HSP length: 17
effective length of query: 347
effective length of database: 43,562,495
effective search space: 15116185765
effective search space used: 15116185765
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)