BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.sd.0.C1
         (1692 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01010.1  68414.m00001 no apical meristem (NAM) family pr...  3332   0.0  
At3g44440.1  68416.m04775 hypothetical protein                     44   0.004
At4g01550.1  68417.m00201 no apical meristem (NAM) family pr...    42   0.015
At3g07950.1  68416.m00972 rhomboid protein-related contains ...    42   0.015
At2g37630.1  68415.m04616 myb family transcription factor (M...    42   0.015
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein contains Pfam
            PF02365: No apical meristem (NAM) domain; similar to NAC
            domain protein NAM GB: AAD17313 GI:4325282 from
            [Arabidopsis thaliana]
          Length = 1688

 Score = 3332 bits (1681), Expect = 0.0
 Identities = 1688/1689 (99%), Gaps = 1/1689 (0%)
 Strand = Plus / Plus

                                                                        
Query: 3    aaattattagatataccaaaccagagaaaacaaatacataatcggagaaatacagattac 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    aaattattagatataccaaaccagagaaaacaaatacataatcggagaaatacagattac 60

                                                                        
Query: 63   agagagcgagagagatcgacggcgaagctctttacccggaaaccattgaaatcggacggt 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   agagagcgagagagatcgacggcgaagctctttacccggaaaccattgaaatcggacggt 120

                                                                        
Query: 123  ttagtgaaaatggaggatcaagttgggtttgggttccgtccgaacgacgaggagctcgtt 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  ttagtgaaaatggaggatcaagttgggtttgggttccgtccgaacgacgaggagctcgtt 180

                                                                        
Query: 183  ggtcactatctccgtaacaaaatcgaaggaaacactagccgcgacgttgaagtagccatc 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  ggtcactatctccgtaacaaaatcgaaggaaacactagccgcgacgttgaagtagccatc 240

                                                                        
Query: 243  agcgaggtcaacatctgtagctacgatccttggaacttgcgcttccagtcaaagtacaaa 302
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  agcgaggtcaacatctgtagctacgatccttggaacttgcgcttccagtcaaagtacaaa 300

                                                                        
Query: 303  tcgagagatgctatgtggtacttcttctctcgtagagaaaacaacaaagggaatcgacag 362
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  tcgagagatgctatgtggtacttcttctctcgtagagaaaacaacaaagggaatcgacag 360

                                                                        
Query: 363  agcaggacaacggtttctggtaaatggaagcttaccggagaatctgttgaggtcaaggac 422
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  agcaggacaacggtttctggtaaatggaagcttaccggagaatctgttgaggtcaaggac 420

                                                                        
Query: 423  cagtggggattttgtagtgagggctttcgtggtaagattggtcataaaagggttttggtg 482
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  cagtggggattttgtagtgagggctttcgtggtaagattggtcataaaagggttttggtg 480

                                                                        
Query: 483  ttcctcgatggaagataccctgacaaaaccaaatctgattgggttatccacgagttccac 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  ttcctcgatggaagataccctgacaaaaccaaatctgattgggttatccacgagttccac 540

                                                                        
Query: 543  tacgacctcttaccagaacatcagaggacatatgtcatctgcagacttgagtacaagggt 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  tacgacctcttaccagaacatcagaggacatatgtcatctgcagacttgagtacaagggt 600

                                                                        
Query: 603  gatgatgcggacattctatctgcttatgcaatagatcccactcccgcttttgtccccaat 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  gatgatgcggacattctatctgcttatgcaatagatcccactcccgcttttgtccccaat 660

                                                                        
Query: 663  atgactagtagtgcaggttctgtggtcaaccaatcacgtcaacgaaattcaggatcttac 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  atgactagtagtgcaggttctgtggtcaaccaatcacgtcaacgaaattcaggatcttac 720

                                                                        
Query: 723  aacacttactctgagtatgattcagcaaatcatggccagcagtttaatgaaaactctaac 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  aacacttactctgagtatgattcagcaaatcatggccagcagtttaatgaaaactctaac 780

                                                                        
Query: 783  attatgcagcagcaaccacttcaaggatcattcaaccctctccttgagtatgattttgca 842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  attatgcagcagcaaccacttcaaggatcattcaaccctctccttgagtatgattttgca 840

                                                                        
Query: 843  aatcacggcggtcagtggctgagtgactatatcgacctgcaacagcaagttccttacttg 902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  aatcacggcggtcagtggctgagtgactatatcgacctgcaacagcaagttccttacttg 900

                                                                        
Query: 903  gcaccttatgaaaatgagtcggagatgatttggaagcatgtgattgaagaaaattttgag 962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  gcaccttatgaaaatgagtcggagatgatttggaagcatgtgattgaagaaaattttgag 960

                                                                        
Query: 963  tttttggtagatgaaaggacatctatgcaacagcattacagtgatcaccggcccaaaaaa 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tttttggtagatgaaaggacatctatgcaacagcattacagtgatcaccggcccaaaaaa 1020

                                                                        
Query: 1023 cctgtgtctggggttttgcctgatgatagcagtgatactgaaactggatcaatgattttc 1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cctgtgtctggggttttgcctgatgatagcagtgatactgaaactggatcaatgattttc 1080

                                                                        
Query: 1083 gaagacacttcgagctccactgatagtgttggtagttcagatgaaccgggccatactcgt 1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaagacacttcgagctccactgatagtgttggtagttcagatgaaccgggccatactcgt 1140

                                                                        
Query: 1143 atagatgatattccatcattgaacattattgagcctttgcacaattataaggcacaagag 1202
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atagatgatattccatcattgaacattattgagcctttgcacaattataaggcacaagag 1200

                                                                        
Query: 1203 caaccaaagcagcagagcaaagaaaaggtgataagttcgcagaaaagcgaatgcgagtgg 1262
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 caaccaaagcagcagagcaaagaaaaggtgataagttcgcagaaaagcgaatgcgagtgg 1260

                                                                        
Query: 1263 aaaatggctgaagactcgatcaagatacctccatccaccaacacggtgaagcagagctgg 1322
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aaaatggctgaagactcgatcaagatacctccatccaccaacacggtgaagcagagctgg 1320

                                                                        
Query: 1323 attgttttggagaatgcacagtggaactatctcaagaacatgatcattggtgtcttgttg 1382
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 attgttttggagaatgcacagtggaactatctcaagaacatgatcattggtgtcttgttg 1380

                                                                        
Query: 1383 ttcatctccgtcattagttggatcattcttgttggttaagaggtcaaatcggattcttgc 1442
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttcatctccgtcattagttggatcattcttgttggttaagaggtcaaatcggattcttgc 1440

                                                                        
Query: 1443 tcaaaatttgtatttcttagaatgtgtgtttttttttgttttttttttctttgctctgtt 1502
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1441 tcaaaatttgtatttcttagaatgtgtgtttttttttg-tttttttttctttgctctgtt 1499

                                                                        
Query: 1503 ttctcgctccggaaaagtttgaagttatattttattagtatgtaaagaagagaaaaaggg 1562
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 ttctcgctccggaaaagtttgaagttatattttattagtatgtaaagaagagaaaaaggg 1559

                                                                        
Query: 1563 ggaaagaagagagaagaaaaatgcagaaaatcatatatatgaattggaaaaaagtatatg 1622
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 ggaaagaagagagaagaaaaatgcagaaaatcatatatatgaattggaaaaaagtatatg 1619

                                                                        
Query: 1623 taataataattagtgcatcgttttgtggtgtagtttatataaataaagtgatatatagtc 1682
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 taataataattagtgcatcgttttgtggtgtagtttatataaataaagtgatatatagtc 1679

                     
Query: 1683 ttgtataag 1691
            |||||||||
Sbjct: 1680 ttgtataag 1688
>At3g44440.1 68416.m04775 hypothetical protein 
          Length = 225

 Score = 44.1 bits (22), Expect = 0.004
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 1469 tgtttttttttgttttttttttcttt 1494
            ||||||||||| ||||||||||||||
Sbjct: 222  tgttttttttttttttttttttcttt 197
>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein similar to
           NAC1 (GI:7716952) {Medicago truncatula}; contains Pfam
           PF02365 : No apical meristem (NAM) protein
          Length = 1698

 Score = 42.1 bits (21), Expect = 0.015
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                            
Query: 236 agccatcagcgaggtcaacatctgtagctacga 268
           |||||| |||||| ||||||||||||| |||||
Sbjct: 272 agccattagcgagatcaacatctgtagttacga 304

 Score = 36.2 bits (18), Expect = 0.94
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 1103 tgatagtgttggtagttc 1120
            ||||||||||||||||||
Sbjct: 1136 tgatagtgttggtagttc 1153
>At3g07950.1 68416.m00972 rhomboid protein-related contains 6 transmembrane
            domains; similar to phosphatidyl inositol glycan class T
            (GI:14456615) [Homo sapiens]
          Length = 1272

 Score = 42.1 bits (21), Expect = 0.015
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1470 gtttttttttgtttttttttt 1490
            |||||||||||||||||||||
Sbjct: 1110 gtttttttttgtttttttttt 1130
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91) contains Pfam
            profile: PF00249 myb-like DNA-binding domain
          Length = 1455

 Score = 42.1 bits (21), Expect = 0.015
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1469 tgtttttttttgttttttttt 1489
            |||||||||||||||||||||
Sbjct: 1327 tgtttttttttgttttttttt 1347

 Score = 38.2 bits (19), Expect = 0.24
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 1471 tttttttttgttttttttt 1489
            |||||||||||||||||||
Sbjct: 1319 tttttttttgttttttttt 1337
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,763
Number of Sequences: 29161
Number of extensions: 66763
Number of successful extensions: 2424
Number of sequences better than 10.0: 168
length of query: 1692
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1674
effective length of database: 43,533,334
effective search space: 72874801116
effective search space used: 72874801116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)