BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.sd.0.C1
(1692 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g01010.1 68414.m00001 no apical meristem (NAM) family pr... 3332 0.0
At3g44440.1 68416.m04775 hypothetical protein 44 0.004
At4g01550.1 68417.m00201 no apical meristem (NAM) family pr... 42 0.015
At3g07950.1 68416.m00972 rhomboid protein-related contains ... 42 0.015
At2g37630.1 68415.m04616 myb family transcription factor (M... 42 0.015
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein contains Pfam
PF02365: No apical meristem (NAM) domain; similar to NAC
domain protein NAM GB: AAD17313 GI:4325282 from
[Arabidopsis thaliana]
Length = 1688
Score = 3332 bits (1681), Expect = 0.0
Identities = 1688/1689 (99%), Gaps = 1/1689 (0%)
Strand = Plus / Plus
Query: 3 aaattattagatataccaaaccagagaaaacaaatacataatcggagaaatacagattac 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattattagatataccaaaccagagaaaacaaatacataatcggagaaatacagattac 60
Query: 63 agagagcgagagagatcgacggcgaagctctttacccggaaaccattgaaatcggacggt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 agagagcgagagagatcgacggcgaagctctttacccggaaaccattgaaatcggacggt 120
Query: 123 ttagtgaaaatggaggatcaagttgggtttgggttccgtccgaacgacgaggagctcgtt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttagtgaaaatggaggatcaagttgggtttgggttccgtccgaacgacgaggagctcgtt 180
Query: 183 ggtcactatctccgtaacaaaatcgaaggaaacactagccgcgacgttgaagtagccatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggtcactatctccgtaacaaaatcgaaggaaacactagccgcgacgttgaagtagccatc 240
Query: 243 agcgaggtcaacatctgtagctacgatccttggaacttgcgcttccagtcaaagtacaaa 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agcgaggtcaacatctgtagctacgatccttggaacttgcgcttccagtcaaagtacaaa 300
Query: 303 tcgagagatgctatgtggtacttcttctctcgtagagaaaacaacaaagggaatcgacag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcgagagatgctatgtggtacttcttctctcgtagagaaaacaacaaagggaatcgacag 360
Query: 363 agcaggacaacggtttctggtaaatggaagcttaccggagaatctgttgaggtcaaggac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 agcaggacaacggtttctggtaaatggaagcttaccggagaatctgttgaggtcaaggac 420
Query: 423 cagtggggattttgtagtgagggctttcgtggtaagattggtcataaaagggttttggtg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cagtggggattttgtagtgagggctttcgtggtaagattggtcataaaagggttttggtg 480
Query: 483 ttcctcgatggaagataccctgacaaaaccaaatctgattgggttatccacgagttccac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttcctcgatggaagataccctgacaaaaccaaatctgattgggttatccacgagttccac 540
Query: 543 tacgacctcttaccagaacatcagaggacatatgtcatctgcagacttgagtacaagggt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tacgacctcttaccagaacatcagaggacatatgtcatctgcagacttgagtacaagggt 600
Query: 603 gatgatgcggacattctatctgcttatgcaatagatcccactcccgcttttgtccccaat 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 gatgatgcggacattctatctgcttatgcaatagatcccactcccgcttttgtccccaat 660
Query: 663 atgactagtagtgcaggttctgtggtcaaccaatcacgtcaacgaaattcaggatcttac 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 atgactagtagtgcaggttctgtggtcaaccaatcacgtcaacgaaattcaggatcttac 720
Query: 723 aacacttactctgagtatgattcagcaaatcatggccagcagtttaatgaaaactctaac 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aacacttactctgagtatgattcagcaaatcatggccagcagtttaatgaaaactctaac 780
Query: 783 attatgcagcagcaaccacttcaaggatcattcaaccctctccttgagtatgattttgca 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 attatgcagcagcaaccacttcaaggatcattcaaccctctccttgagtatgattttgca 840
Query: 843 aatcacggcggtcagtggctgagtgactatatcgacctgcaacagcaagttccttacttg 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 aatcacggcggtcagtggctgagtgactatatcgacctgcaacagcaagttccttacttg 900
Query: 903 gcaccttatgaaaatgagtcggagatgatttggaagcatgtgattgaagaaaattttgag 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 gcaccttatgaaaatgagtcggagatgatttggaagcatgtgattgaagaaaattttgag 960
Query: 963 tttttggtagatgaaaggacatctatgcaacagcattacagtgatcaccggcccaaaaaa 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tttttggtagatgaaaggacatctatgcaacagcattacagtgatcaccggcccaaaaaa 1020
Query: 1023 cctgtgtctggggttttgcctgatgatagcagtgatactgaaactggatcaatgattttc 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 cctgtgtctggggttttgcctgatgatagcagtgatactgaaactggatcaatgattttc 1080
Query: 1083 gaagacacttcgagctccactgatagtgttggtagttcagatgaaccgggccatactcgt 1142
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 gaagacacttcgagctccactgatagtgttggtagttcagatgaaccgggccatactcgt 1140
Query: 1143 atagatgatattccatcattgaacattattgagcctttgcacaattataaggcacaagag 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 atagatgatattccatcattgaacattattgagcctttgcacaattataaggcacaagag 1200
Query: 1203 caaccaaagcagcagagcaaagaaaaggtgataagttcgcagaaaagcgaatgcgagtgg 1262
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 caaccaaagcagcagagcaaagaaaaggtgataagttcgcagaaaagcgaatgcgagtgg 1260
Query: 1263 aaaatggctgaagactcgatcaagatacctccatccaccaacacggtgaagcagagctgg 1322
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 aaaatggctgaagactcgatcaagatacctccatccaccaacacggtgaagcagagctgg 1320
Query: 1323 attgttttggagaatgcacagtggaactatctcaagaacatgatcattggtgtcttgttg 1382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 attgttttggagaatgcacagtggaactatctcaagaacatgatcattggtgtcttgttg 1380
Query: 1383 ttcatctccgtcattagttggatcattcttgttggttaagaggtcaaatcggattcttgc 1442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ttcatctccgtcattagttggatcattcttgttggttaagaggtcaaatcggattcttgc 1440
Query: 1443 tcaaaatttgtatttcttagaatgtgtgtttttttttgttttttttttctttgctctgtt 1502
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1441 tcaaaatttgtatttcttagaatgtgtgtttttttttg-tttttttttctttgctctgtt 1499
Query: 1503 ttctcgctccggaaaagtttgaagttatattttattagtatgtaaagaagagaaaaaggg 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1500 ttctcgctccggaaaagtttgaagttatattttattagtatgtaaagaagagaaaaaggg 1559
Query: 1563 ggaaagaagagagaagaaaaatgcagaaaatcatatatatgaattggaaaaaagtatatg 1622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1560 ggaaagaagagagaagaaaaatgcagaaaatcatatatatgaattggaaaaaagtatatg 1619
Query: 1623 taataataattagtgcatcgttttgtggtgtagtttatataaataaagtgatatatagtc 1682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1620 taataataattagtgcatcgttttgtggtgtagtttatataaataaagtgatatatagtc 1679
Query: 1683 ttgtataag 1691
|||||||||
Sbjct: 1680 ttgtataag 1688
>At3g44440.1 68416.m04775 hypothetical protein
Length = 225
Score = 44.1 bits (22), Expect = 0.004
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1469 tgtttttttttgttttttttttcttt 1494
||||||||||| ||||||||||||||
Sbjct: 222 tgttttttttttttttttttttcttt 197
>At4g01550.1 68417.m00201 no apical meristem (NAM) family protein similar to
NAC1 (GI:7716952) {Medicago truncatula}; contains Pfam
PF02365 : No apical meristem (NAM) protein
Length = 1698
Score = 42.1 bits (21), Expect = 0.015
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 236 agccatcagcgaggtcaacatctgtagctacga 268
|||||| |||||| ||||||||||||| |||||
Sbjct: 272 agccattagcgagatcaacatctgtagttacga 304
Score = 36.2 bits (18), Expect = 0.94
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1103 tgatagtgttggtagttc 1120
||||||||||||||||||
Sbjct: 1136 tgatagtgttggtagttc 1153
>At3g07950.1 68416.m00972 rhomboid protein-related contains 6 transmembrane
domains; similar to phosphatidyl inositol glycan class T
(GI:14456615) [Homo sapiens]
Length = 1272
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1470 gtttttttttgtttttttttt 1490
|||||||||||||||||||||
Sbjct: 1110 gtttttttttgtttttttttt 1130
>At2g37630.1 68415.m04616 myb family transcription factor (MYB91) contains Pfam
profile: PF00249 myb-like DNA-binding domain
Length = 1455
Score = 42.1 bits (21), Expect = 0.015
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1469 tgtttttttttgttttttttt 1489
|||||||||||||||||||||
Sbjct: 1327 tgtttttttttgttttttttt 1347
Score = 38.2 bits (19), Expect = 0.24
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1471 tttttttttgttttttttt 1489
|||||||||||||||||||
Sbjct: 1319 tttttttttgttttttttt 1337
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,763
Number of Sequences: 29161
Number of extensions: 66763
Number of successful extensions: 2424
Number of sequences better than 10.0: 168
length of query: 1692
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1674
effective length of database: 43,533,334
effective search space: 72874801116
effective search space used: 72874801116
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)