BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.8.cl.887.Contig1
(627 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g13750.1 68416.m01735 beta-galactosidase, putative / lac... 1229 0.0
At5g41740.1 68418.m05076 disease resistance protein (TIR-NB... 50 2e-05
At3g19340.1 68416.m02454 expressed protein 50 2e-05
At5g59000.1 68418.m07391 zinc finger (C3HC4-type RING finge... 48 9e-05
At5g16040.1 68418.m01875 regulator of chromosome condensati... 48 9e-05
>At3g13750.1 68416.m01735 beta-galactosidase, putative / lactase, putative similar
to beta-galactosidase precursor SP:P48980 from
[Lycopersicon esculentum]
Length = 3300
Score = 1229 bits (620), Expect = 0.0
Identities = 623/624 (99%)
Strand = Plus / Plus
Query: 4 aactttagcaccggagatgtttggtggagatccgtgtccaaatgtgatgaagaaactcgc 63
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2677 aactgtagcaccggagatgtttggtggagatccgtgtccaaatgtgatgaagaaactcgc 2736
Query: 64 ggtggaagccgtttgtgcttaaatgaaagcagacgcaacagcaatcaaaagactgtaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2737 ggtggaagccgtttgtgcttaaatgaaagcagacgcaacagcaatcaaaagactgtaaag 2796
Query: 124 gtggttacttacgcattcttacaggtttctgatggtattagtatgttttatgaagacaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2797 gtggttacttacgcattcttacaggtttctgatggtattagtatgttttatgaagacaac 2856
Query: 184 agaagaagttggtatttttctagctccttattttatcacggtggaagttgtacaaaggga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2857 agaagaagttggtatttttctagctccttattttatcacggtggaagttgtacaaaggga 2916
Query: 244 cgcagcacgccgttcaacaatttgcagagttgtgatttatatgtaaataagcttgggaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2917 cgcagcacgccgttcaacaatttgcagagttgtgatttatatgtaaataagcttgggaag 2976
Query: 304 ggtttgttattgtaacccaagaaagaagatgaagaagaagaagaagcacattgagactgg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2977 ggtttgttattgtaacccaagaaagaagatgaagaagaagaagaagcacattgagactgg 3036
Query: 364 agaatctaagtccatgtgtagattcttttggtaggagcaaaactgggattagtttattct 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3037 agaatctaagtccatgtgtagattcttttggtaggagcaaaactgggattagtttattct 3096
Query: 424 ctgagttttgctttgaacgtgtttgttgttgctgttgttgtagtcgatactattagatga 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3097 ctgagttttgctttgaacgtgtttgttgttgctgttgttgtagtcgatactattagatga 3156
Query: 484 gacattctctgcaattatctcattgctaaatttatgtaatggtttttctttctttctatg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3157 gacattctctgcaattatctcattgctaaatttatgtaatggtttttctttctttctatg 3216
Query: 544 gaatgaagcatatcagtcttgaagtaaaccaatgtgtgaatcacccctccaaatattgag 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3217 gaatgaagcatatcagtcttgaagtaaaccaatgtgtgaatcacccctccaaatattgag 3276
Query: 604 cttttgaaatttattcattctacc 627
||||||||||||||||||||||||
Sbjct: 3277 cttttgaaatttattcattctacc 3300
>At5g41740.1 68418.m05076 disease resistance protein (TIR-NBS-LRR class),
putative domain signature TIR-NBS-LRR exists, suggestive
of a disease resistance protein.
Length = 3644
Score = 50.1 bits (25), Expect = 2e-05
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 326 aagaagatgaagaagaagaagaagc 350
|||||||||||||||||||||||||
Sbjct: 89 aagaagatgaagaagaagaagaagc 65
>At3g19340.1 68416.m02454 expressed protein
Length = 1733
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 322 aagaaagaagatgaagaagaagaagaagc 350
||||||||||| |||||||||||||||||
Sbjct: 110 aagaaagaagaagaagaagaagaagaagc 82
>At5g59000.1 68418.m07391 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4 type
(RING finger) ;contains PROSITE PS00190: Cytochrome c
family heme-binding site signature
Length = 929
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||||||||||||||||||||
Sbjct: 346 aagaagatgaagaagaagaagaag 369
Score = 40.1 bits (20), Expect = 0.022
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 328 gaagatgaagaagaagaaga 347
||||||||||||||||||||
Sbjct: 303 gaagatgaagaagaagaaga 322
Score = 40.1 bits (20), Expect = 0.022
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||| ||||||||||||||||
Sbjct: 358 aagaagaagaagaagaagaagaag 381
Score = 40.1 bits (20), Expect = 0.022
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||| ||||||||||||||||
Sbjct: 355 aagaagaagaagaagaagaagaag 378
Score = 40.1 bits (20), Expect = 0.022
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||| ||||||||||||||||
Sbjct: 361 aagaagaagaagaagaagaagaag 384
Score = 38.2 bits (19), Expect = 0.087
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaagaa 348
||||||| |||||||||||||||
Sbjct: 364 aagaagaagaagaagaagaagaa 386
Score = 38.2 bits (19), Expect = 0.087
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 323 agaaagaagatgaagaagaagaagaag 349
||||||| || ||||||||||||||||
Sbjct: 210 agaaagaggaggaagaagaagaagaag 236
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 328 gaagatgaagaagaagaagaag 349
||||||||||| ||||||||||
Sbjct: 297 gaagatgaagatgaagaagaag 318
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 328 gaagatgaagaagaagaagaag 349
||||| ||||||||||||||||
Sbjct: 354 gaagaagaagaagaagaagaag 375
Score = 36.2 bits (18), Expect = 0.34
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 328 gaagatgaagaagaagaagaag 349
|||||||||||||| |||||||
Sbjct: 339 gaagatgaagaagatgaagaag 360
Score = 34.2 bits (17), Expect = 1.4
Identities = 20/21 (95%)
Strand = Plus / Plus
Query: 328 gaagatgaagaagaagaagaa 348
||||| |||||||||||||||
Sbjct: 221 gaagaagaagaagaagaagaa 241
Score = 32.2 bits (16), Expect = 5.3
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 326 aagaagatgaagaagaagaa 345
||||||| ||||||||||||
Sbjct: 222 aagaagaagaagaagaagaa 241
Score = 32.2 bits (16), Expect = 5.3
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 334 gaagaagaagaagaag 349
||||||||||||||||
Sbjct: 224 gaagaagaagaagaag 239
>At5g16040.1 68418.m01875 regulator of chromosome condensation (RCC1) family
protein similar to UVB-resistance protein UVR8
[Arabidopsis thaliana] GI:5478530; contains Pfam profile
PF00415: Regulator of chromosome condensation (RCC1)
Length = 1745
Score = 48.1 bits (24), Expect = 9e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||||||||||||||||||||
Sbjct: 1703 aagaagatgaagaagaagaagaag 1680
Score = 32.2 bits (16), Expect = 5.3
Identities = 19/20 (95%)
Strand = Plus / Minus
Query: 328 gaagatgaagaagaagaaga 347
||||| ||||||||||||||
Sbjct: 1695 gaagaagaagaagaagaaga 1676
Score = 32.2 bits (16), Expect = 5.3
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 326 aagaagatgaagaagaagaagaag 349
|||||||||| ||||||||||||
Sbjct: 1658 aagaagatgataaagaagaagaag 1635
Score = 32.2 bits (16), Expect = 5.3
Identities = 22/24 (91%)
Strand = Plus / Minus
Query: 326 aagaagatgaagaagaagaagaag 349
||||||| ||| ||||||||||||
Sbjct: 1640 aagaagacgaacaagaagaagaag 1617
Score = 32.2 bits (16), Expect = 5.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 334 gaagaagaagaagaag 349
||||||||||||||||
Sbjct: 1692 gaagaagaagaagaag 1677
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,227
Number of Sequences: 29161
Number of extensions: 50227
Number of successful extensions: 13502
Number of sequences better than 10.0: 1683
length of query: 627
length of database: 44,058,232
effective HSP length: 17
effective length of query: 610
effective length of database: 43,562,495
effective search space: 26573121950
effective search space used: 26573121950
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)