BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.8.cl.845.Contig1
(515 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1... 1007 0.0
At5g19410.1 68418.m02313 ABC transporter family protein whi... 34 1.1
At4g32200.1 68417.m04582 DNA-binding HORMA domain-containin... 34 1.1
At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) n... 34 1.1
At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomeras... 34 1.1
>At4g21960.1 68417.m03178 peroxidase 42 (PER42) (P42) (PRXR1) identical to
SP|Q9SB81 Peroxidase 42 precursor (EC 1.11.1.7) (Atperox
P42) (PRXR1) (ATP1a/ATP1b) {Arabidopsis thaliana}
Length = 1481
Score = 1007 bits (508), Expect = 0.0
Identities = 515/516 (99%), Gaps = 1/516 (0%)
Strand = Plus / Plus
Query: 1 tatccgaga-caaccccttgactggctctaagggtgagatcaggaagcaatgtaatctcg 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 966 tatccgagaacaaccccttgactggctctaagggtgagatcaggaagcaatgtaatctcg 1025
Query: 60 caaacaagaaccattgaagttggaaaaagtgagaaagacaggggctctggtgtgttgagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1026 caaacaagaaccattgaagttggaaaaagtgagaaagacaggggctctggtgtgttgagt 1085
Query: 120 tctctgcttggtacgaaccaagatgaataaaaaaatcttttaagttaaatcaaagaaagg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1086 tctctgcttggtacgaaccaagatgaataaaaaaatcttttaagttaaatcaaagaaagg 1145
Query: 180 gtgatgatgaatacatcatggtagtgaccacctccttcttttgtgtgttcagccttaatg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1146 gtgatgatgaatacatcatggtagtgaccacctccttcttttgtgtgttcagccttaatg 1205
Query: 240 ctttaattatgatgttagtggctttgagttatttaatctaaatgttggctcttcgttgat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1206 ctttaattatgatgttagtggctttgagttatttaatctaaatgttggctcttcgttgat 1265
Query: 300 tttgggtttgtggtgggggtgatataatgataatggaaaggatgtatgatatgatggatg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1266 tttgggtttgtggtgggggtgatataatgataatggaaaggatgtatgatatgatggatg 1325
Query: 360 gtgttgggtatcatgtatgacgatgtaatgataagtaaacatgtccgaatcttttgataa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1326 gtgttgggtatcatgtatgacgatgtaatgataagtaaacatgtccgaatcttttgataa 1385
Query: 420 tttgttcaacatgcatggtatacataagtactgtgtatgggtgatatcgatctattttac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1386 tttgttcaacatgcatggtatacataagtactgtgtatgggtgatatcgatctattttac 1445
Query: 480 tgatctcaccaaagattttaaaaatttgtagtaaat 515
||||||||||||||||||||||||||||||||||||
Sbjct: 1446 tgatctcaccaaagattttaaaaatttgtagtaaat 1481
>At5g19410.1 68418.m02313 ABC transporter family protein white membrane
transporter, Bactrocera tryoni, EMBL:U97104
Length = 1875
Score = 34.2 bits (17), Expect = 1.1
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 356 gatggtgttgggtatcatgta 376
||||||||||| |||||||||
Sbjct: 1350 gatggtgttggctatcatgta 1330
>At4g32200.1 68417.m04582 DNA-binding HORMA domain-containing protein similar to
meiotic asynaptic mutant 1 [Arabidopsis thaliana]
GI:7939627, aysnaptic 1 [Brassica oleracea var.
alboglabra] GI:23506946; contains Pfam profile PF02301:
HORMA domain
Length = 4332
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 499 aaaaatttgtagtaaat 515
|||||||||||||||||
Sbjct: 1272 aaaaatttgtagtaaat 1288
>At2g24210.1 68415.m02892 myrcene/ocimene synthase (TPS10) nearly identical to
GI:9957293; contains Pfam profile: PF01397 terpene
synthase family
Length = 1776
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 81 ggaaaaagtgagaaaga 97
|||||||||||||||||
Sbjct: 243 ggaaaaagtgagaaaga 259
>At2g18040.1 68415.m02097 peptidyl-prolyl cis-trans isomerase (PIN1) /
cyclophilin / rotamase identical to Chain A, Solution
Structure Of Pin1at From Arabidopsis Thaliana
GI:22218833; contains Pfam profile PF00639: PPIC-type
PPIASE domain
Length = 861
Score = 34.2 bits (17), Expect = 1.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 289 tcttcgttgattttggg 305
|||||||||||||||||
Sbjct: 64 tcttcgttgattttggg 48
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 17,025
Number of Sequences: 29161
Number of extensions: 17025
Number of successful extensions: 1363
Number of sequences better than 10.0: 26
length of query: 515
length of database: 44,058,232
effective HSP length: 17
effective length of query: 498
effective length of database: 43,562,495
effective search space: 21694122510
effective search space used: 21694122510
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)