BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.8.cl.844.Contig2
         (2257 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T05745  hypothetical protein M4I22.20 - Arabidopsis tha...    50   2e-04
pir||T05744  hypothetical protein M4I22.10 - Arabidopsis tha...    49   5e-04
dbj|BAB02224.1|  unnamed protein product [Arabidopsis thaliana]    47   0.002
ref|NP_192433.1|  ubiquitin family protein [Arabidopsis thal...    39   0.51 
ref|ZP_00004333.2|  COG0097: Ribosomal protein L6P/L9E [Rhod...    35   5.6  
emb|CAE67730.1|  Hypothetical protein CBG13305 [Caenorhabdit...    35   9.5  

>pir||T05745 hypothetical protein M4I22.20 - Arabidopsis
            thaliana|gi|3269282|emb|CAA19715.1| putative protein
            [Arabidopsis thaliana]|gi|7269574|emb|CAB79576.1|
            putative protein [Arabidopsis thaliana]
          Length = 1318

 Score = 50.1 bits (118), Expect = 2e-04
 Identities = 33/101 (32%), Positives = 43/101 (41%)
 Frame = +2

Query: 1811 PFQQVEVSINTIQVRAEAFSGKRQYVVVSANGAKRKMKQMGLAQTXXXXXXXXXXXXXXX 1990
            P   +  +INTIQV+       RQ  VVS+N AK++MK     +                
Sbjct: 1221 PTPSLRGTINTIQVKP------RQNFVVSSNSAKKQMKAQCRPKKPTTQVWKQRSSAIKT 1274

Query: 1991 XXXXXXXXXXXGAGNKETTTSCTAKQFNVKLENRFSTLDSE 2113
                             +  +CT K FN+KLENRF TLDSE
Sbjct: 1275 ETPEVSPSYDKNRAGTTSPNACTEKAFNIKLENRFLTLDSE 1315



>pir||T05744 hypothetical protein M4I22.10 - Arabidopsis
            thaliana|gi|3269281|emb|CAA19714.1| putative protein
            [Arabidopsis thaliana]|gi|7269573|emb|CAB79575.1|
            putative protein [Arabidopsis thaliana]
          Length = 819

 Score = 48.9 bits (115), Expect = 5e-04
 Identities = 32/101 (31%), Positives = 43/101 (41%)
 Frame = +2

Query: 1811 PFQQVEVSINTIQVRAEAFSGKRQYVVVSANGAKRKMKQMGLAQTXXXXXXXXXXXXXXX 1990
            P   +  +INTIQV+       RQ  VVS+N AK+++K     +                
Sbjct: 722  PTPSLRGTINTIQVKP------RQNFVVSSNSAKKQIKAQCRPKKPTTQVWKQRSSETKT 775

Query: 1991 XXXXXXXXXXXGAGNKETTTSCTAKQFNVKLENRFSTLDSE 2113
                             +  +CT K FN+KLENRF TLDSE
Sbjct: 776  ETPEASPSHDKNRAGTTSPNACTEKAFNIKLENRFLTLDSE 816



>dbj|BAB02224.1| unnamed protein product [Arabidopsis thaliana]
          Length = 214

 Score = 47.0 bits (110), Expect = 0.002
 Identities = 28/73 (38%), Positives = 39/73 (53%)
 Frame = +1

Query: 793  YVQYLFGYRFGSALNSNFWV*KY*TSSGNLKFWIRIWIGFFGPDSDWMLGFGYYA*VLNM 972
            YV+ L   +  S L S FWV K+   S  LKFW+R+ IG FG  S    GFG +  V + 
Sbjct: 104  YVRVLDQVQVQSDLGSGFWVLKFRIRSDILKFWVRVRIGLFGSGSVQFFGFGEWVKV-DP 162

Query: 973  LLYVISLENKRDN 1011
            L++ +  E   +N
Sbjct: 163  LVWNLESETMEEN 175



>ref|NP_192433.1| ubiquitin family protein [Arabidopsis
            thaliana]|gi|25407322|pir||H85065 hypothetical protein
            AT4g05240 [imported] - Arabidopsis
            thaliana|gi|7267284|emb|CAB81066.1| putative protein
            [Arabidopsis thaliana]
          Length = 197

 Score = 38.9 bits (89), Expect = 0.51
 Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
 Frame = +2

Query: 1832 SINTIQV----RAEAFSGKRQYVVVSANGAKRKMKQMGLA 1939
            +IN+IQ+    R E FSGK QY  VS+N AK++MK MG A
Sbjct: 3    TINSIQIKPPNRVEGFSGKCQYTAVSSNAAKKQMK-MGFA 41



>ref|ZP_00004333.2| COG0097: Ribosomal protein L6P/L9E [Rhodobacter sphaeroides]
          Length = 163

 Score = 35.4 bits (80), Expect = 5.6
 Identities = 20/72 (27%), Positives = 39/72 (53%), Gaps = 2/72 (2%)
 Frame = -1

Query: 1693 VTGENVETHHPEKTFAITLTEKLITLLD--SNLPTPKNLTGTNKLTPSKWRLCRDQYEGI 1520
            ++G+++E   P+ T + + T+ +   LD  S   TP+   GT+K    +W + R Q E +
Sbjct: 5    ISGQSIEVKGPKGTRSFSATDDVTLALDEGSVKVTPR---GTSKRARQQWGMVRSQVENL 61

Query: 1519 LSCLTQNFDRTL 1484
            ++ +T  F + L
Sbjct: 62   VTGVTSGFKKEL 73



>emb|CAE67730.1| Hypothetical protein CBG13305 [Caenorhabditis briggsae]
          Length = 869

 Score = 34.7 bits (78), Expect = 9.5
 Identities = 15/49 (30%), Positives = 27/49 (54%)
 Frame = -2

Query: 1320 IQRMRST*DSERARTTALK*CTASKRMKLRASGKEPLRREFSPPPPARN 1174
            + R+R   + +R R   +K     K ++++    EP R+EF PPPP ++
Sbjct: 357  VDRLRREVEEQRQREKEVKQYRNPKTLEVQVKSPEPKRKEFLPPPPPQS 405



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 134
effective length of database: 375,742,986
effective search space used: 231833422362
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)