BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.8.cl.840.Contig1
(1314 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly... 1445 0.0
At3g57080.1 68416.m06355 eukaryotic rpb5 RNA polymerase sub... 40 0.047
At5g18830.2 68418.m02238 squamosa promoter-binding protein-... 36 0.73
At5g18830.1 68418.m02237 squamosa promoter-binding protein-... 36 0.73
At2g46570.1 68415.m05809 laccase family protein / diphenol ... 36 0.73
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly identical to RNA
helicase [Arabidopsis thaliana] GI:3775987; contains Pfam
profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain, PF00098: Zinc
knuckle
Length = 2244
Score = 1445 bits (729), Expect = 0.0
Identities = 743/747 (99%), Gaps = 3/747 (0%)
Strand = Plus / Plus
Query: 1 cctgactccataaagtttttctcagcaactgctcaaaaactatatgaggagaaaggaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 cctgactccataaagtttttctcagcaactgctcaaaaactatatgaggagaaaggaaca 1560
Query: 61 gatgctttagctgcagctctagctcacctgagtggtttctctcagccgccttcatcaaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 gatgctttagctgcagctctagctcacctgagtggtttctctcagccgccttcatcaaga 1620
Query: 121 tctctcctcagccatgagaagggatgggtgactttgcaattgatccgagatccaacgaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 tctctcctcagccatgagaagggatgggtgactttgcaattgatccgagatccaacgaac 1680
Query: 181 gctagaggctttctgtctgcgaggtctgttactggttttctttccgatctttaccgtaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gctagaggctttctgtctgcgaggtctgttactggttttctttccgatctttaccgtaca 1740
Query: 241 gctgcagatgaagttggaaaaatcttcttgatcgccgatgacaggatccaaggagctgta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 gctgcagatgaagttggaaaaatcttcttgatcgccgatgacaggatccaaggagctgta 1800
Query: 301 tttgatctaccagaggagatcgcgaaagagctcctagagaaagatgtccccgaaggcaac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tttgatctaccagaggagatcgcgaaagagctcctagagaaagatgtccccgaaggcaac 1860
Query: 361 agtttatccatgataacaaagttacctccacttcaagatgacggaccatctagtgataac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1861 agtttatccatgataacaaagttacctccacttcaagatgacggaccatctagtgataac 1920
Query: 421 tacggacggttctctagcagagacaggatgcctagaggaggaggaggttctagagggtca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1921 tacggacggttctctagcagagacaggatgcctagaggaggaggaggttctagagggtca 1980
Query: 481 agaggcggtagaggaggatcatcacgaggccgtgatagttgggaaggtgatgatgacaga 540
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 1981 agaggcggtagaggaggatcatcacgaggccgtgatagttggggaggtgatgatgacaga 2040
Query: 541 ggtagtagaaggagcagtggtggaggaagcagctggtcccgaggtggtagtagttccaga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2041 ggtagtagaaggagcagtggtggaggaagcagctggtcccgaggtggtagtagttccaga 2100
Query: 601 ggaagttctgatgattggttgatcggtggcagaagttcatcaagcagcagagctccttcg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2101 ggaagttctgatgattggttgatcggtggcagaagttcatcaagcagcagagctccttcg 2160
Query: 661 cgggagagaagttttggaggttcatgcttcatttgtgggaaatctggacacagggcaaca 720
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2161 cgggag---agttttggaggttcatgcttcatttgtgggaaatctggacacagggcaaca 2217
Query: 721 gattgtcctgataagagaggattttag 747
|||||||||||||||||||||||||||
Sbjct: 2218 gattgtcctgataagagaggattttag 2244
>At3g57080.1 68416.m06355 eukaryotic rpb5 RNA polymerase subunit family protein
similar to SP|P19388 DNA-directed RNA polymerase II 23
kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains
Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal
domain, PF01191: RNA polymerase Rpb5 C-terminal domain
Length = 856
Score = 40.1 bits (20), Expect = 0.047
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1050 atgtttctaaggttttgttt 1069
||||||||||||||||||||
Sbjct: 745 atgtttctaaggttttgttt 764
>At5g18830.2 68418.m02238 squamosa promoter-binding protein-like 7 (SPL7)
identical to squamosa promoter binding protein-like 7
[Arabidopsis thaliana] GI:5931635; contains Pfam profile
PF03110: SBP domain
Length = 2876
Score = 36.2 bits (18), Expect = 0.73
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 481 agaggcggtagaggagga 498
||||||||||||||||||
Sbjct: 288 agaggcggtagaggagga 271
>At5g18830.1 68418.m02237 squamosa promoter-binding protein-like 7 (SPL7)
identical to squamosa promoter binding protein-like 7
[Arabidopsis thaliana] GI:5931635; contains Pfam profile
PF03110: SBP domain
Length = 2954
Score = 36.2 bits (18), Expect = 0.73
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 481 agaggcggtagaggagga 498
||||||||||||||||||
Sbjct: 288 agaggcggtagaggagga 271
>At2g46570.1 68415.m05809 laccase family protein / diphenol oxidase family
protein similar to laccase [Populus balsamifera subsp.
trichocarpa][GI:3805960]
Length = 1710
Score = 36.2 bits (18), Expect = 0.73
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 53 aaggaacagatgctttag 70
||||||||||||||||||
Sbjct: 466 aaggaacagatgctttag 449
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 47,469
Number of Sequences: 29161
Number of extensions: 47469
Number of successful extensions: 1255
Number of sequences better than 10.0: 29
length of query: 1314
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1296
effective length of database: 43,533,334
effective search space: 56419200864
effective search space used: 56419200864
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)