BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.8.cl.819.Contig1
(608 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g16110.1 68418.m01882 expressed protein hypothetical pro... 1197 0.0
At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Si... 44 0.001
At5g03110.1 68418.m00259 expressed protein various predicte... 42 0.005
At5g48385.1 68418.m05980 expressed protein 40 0.021
At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finge... 40 0.021
>At5g16110.1 68418.m01882 expressed protein hypothetical protein T26J14.6 -
Arabidopsis thaliana, EMBL:AC011915
Length = 1474
Score = 1197 bits (604), Expect = 0.0
Identities = 607/608 (99%)
Strand = Plus / Plus
Query: 1 accgttaccgtcaaaactcgagcatccctgccatggcttagtagacaaacaacaaaaaaa 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 accgtgaccgtcaaaactcgagcatccctgccatggcttagtagacaaacaacaaaaaaa 926
Query: 61 caagtgtacatagagattccggaatcgttcgttcgccaatgcctaacagaggaggatttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 caagtgtacatagagattccggaatcgttcgttcgccaatgcctaacagaggaggatttg 986
Query: 121 attactactgctgcaactattactactaccatttttgaaagtaaatgaatatgtttttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 attactactgctgcaactattactactaccatttttgaaagtaaatgaatatgtttttgt 1046
Query: 181 ttttcatcttctcctaagagagagagagagggaagaggaaggaggaagatgaagatcagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ttttcatcttctcctaagagagagagagagggaagaggaaggaggaagatgaagatcagt 1106
Query: 241 taccgtcgccggtcaccgtttaactgttttattcaggttagtgtttgtatataaagatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 taccgtcgccggtcaccgtttaactgttttattcaggttagtgtttgtatataaagatgc 1166
Query: 301 agtatttaaaagaagagtcgaatctatgtattcgtttggtgtttttctgggtcgggcgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 agtatttaaaagaagagtcgaatctatgtattcgtttggtgtttttctgggtcgggcgga 1226
Query: 361 tctttagtactgtttcatatataactaagagggaagattagaagatgaagaagctgtaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 tctttagtactgtttcatatataactaagagggaagattagaagatgaagaagctgtaaa 1286
Query: 421 attttcttgggaagaaaactctggtttctatcttctcgttgtaatatagataatcaactt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 attttcttgggaagaaaactctggtttctatcttctcgttgtaatatagataatcaactt 1346
Query: 481 ggatttatcttctttcagattcaccattgtatatagtaatgtttatttttcttggtgatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 ggatttatcttctttcagattcaccattgtatatagtaatgtttatttttcttggtgatt 1406
Query: 541 tctaagttctctctcacctttgtatatcaatgcttcttaactaaagtcaatcatatatga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 tctaagttctctctcacctttgtatatcaatgcttcttaactaaagtcaatcatatatga 1466
Query: 601 tgtcttac 608
||||||||
Sbjct: 1467 tgtcttac 1474
>At1g21730.1 68414.m02720 kinesin-related protein (MKRP1) Similar to gb|U06698
neuronal kinesin heavy chain from Homo sapiens and
contains a PF|00225 Kinesin motor domain. EST
gb|AA042507 comes from this gene; identical to cDNA
MKRP1 mRNA for kinesin-related protein, GI:16902291,
kinesin-related protein [Arabidopsis thaliana]
GI:16902292
Length = 3278
Score = 44.1 bits (22), Expect = 0.001
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 196 aagagagagagagagggaagaggaag 221
||||||||||||||||||||| ||||
Sbjct: 194 aagagagagagagagggaagaagaag 169
>At5g03110.1 68418.m00259 expressed protein various predicted proteins,
Arabidopsis thaliana
Length = 1157
Score = 42.1 bits (21), Expect = 0.005
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 197 agagagagagagagggaagaggaag 221
|||||||||||||||||| ||||||
Sbjct: 27 agagagagagagagggaaaaggaag 51
>At5g48385.1 68418.m05980 expressed protein
Length = 2233
Score = 40.1 bits (20), Expect = 0.021
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 197 agagagagagagagggaagaggaa 220
|||||||||||||| |||||||||
Sbjct: 59 agagagagagagagagaagaggaa 36
>At2g47700.1 68415.m05957 zinc finger (C3HC4-type RING finger) family protein
contains Pfam profile: PF00097 zinc finger, C3HC4
type(RING finger)
Length = 1502
Score = 40.1 bits (20), Expect = 0.021
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Plus
Query: 197 agagagagagagag-ggaagaggaagga 223
|||||||||||||| |||||||||||||
Sbjct: 30 agagagagagagagaggaagaggaagga 57
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 38,592
Number of Sequences: 29161
Number of extensions: 38592
Number of successful extensions: 6885
Number of sequences better than 10.0: 208
length of query: 608
length of database: 44,058,232
effective HSP length: 17
effective length of query: 591
effective length of database: 43,562,495
effective search space: 25745434545
effective search space used: 25745434545
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)