BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.7.cl.798.Contig1
(727 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96... 1441 0.0
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96... 874 0.0
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96... 426 e-118
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P... 278 6e-74
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical... 254 9e-67
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 Actin 2
{Arabidopsis thaliana}; nearly identical to SP|Q96293
Actin 8 [Arabidopsis thaliana] GI:1669387 and to
At1g49240
Length = 1727
Score = 1441 bits (727), Expect = 0.0
Identities = 727/727 (100%)
Strand = Plus / Plus
Query: 1 agaagtcttgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agaagtcttgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaac 1060
Query: 61 ctataactcaatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ctataactcaatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgt 1120
Query: 121 gctcagtggtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 gctcagtggtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcac 1180
Query: 181 agcacttgcaccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 agcacttgcaccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacag 1240
Query: 241 tgtctggatcggtggttccattcttgcttccctcagcacattccagcagatgtggatctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1241 tgtctggatcggtggttccattcttgcttccctcagcacattccagcagatgtggatctc 1300
Query: 301 caaggccgagtatgatgaggcaggtccaggaatcgttcacagaaaatgtttctaagctct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1301 caaggccgagtatgatgaggcaggtccaggaatcgttcacagaaaatgtttctaagctct 1360
Query: 361 caagatcaaaggcttaaaaagctggggttttatgaatgggatcaaagtttctttttttct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1361 caagatcaaaggcttaaaaagctggggttttatgaatgggatcaaagtttctttttttct 1420
Query: 421 tttatatttgcttctccatttgtttgtttcatttccctttttgttttcgtttctatgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1421 tttatatttgcttctccatttgtttgtttcatttccctttttgttttcgtttctatgatg 1480
Query: 481 cacttgtgtgtgacaaactctctgggtttttacttacgtctgcgtttcaaaaaaaaaaac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1481 cacttgtgtgtgacaaactctctgggtttttacttacgtctgcgtttcaaaaaaaaaaac 1540
Query: 541 cgctttcgttttgcgttttagtcccattgttttgtagctctgagtgatcgaattgatgcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 cgctttcgttttgcgttttagtcccattgttttgtagctctgagtgatcgaattgatgcc 1600
Query: 601 tctttattccttttgttccctataatttctttcaaaactcagaagaaaaaccttgaaact 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 tctttattccttttgttccctataatttctttcaaaactcagaagaaaaaccttgaaact 1660
Query: 661 ctttgcaatgttaatataagtattgtataagatttttattgatttggttattagtcttac 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ctttgcaatgttaatataagtattgtataagatttttattgatttggttattagtcttac 1720
Query: 721 ttttgct 727
|||||||
Sbjct: 1721 ttttgct 1727
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 Actin 2
{Arabidopsis thaliana}; nearly identical to SP|Q96293
Actin 8 [Arabidopsis thaliana] GI:1669387 and to
At1g49240
Length = 1813
Score = 874 bits (441), Expect = 0.0
Identities = 441/441 (100%)
Strand = Plus / Plus
Query: 287 cagatgtggatctccaaggccgagtatgatgaggcaggtccaggaatcgttcacagaaaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 cagatgtggatctccaaggccgagtatgatgaggcaggtccaggaatcgttcacagaaaa 1432
Query: 347 tgtttctaagctctcaagatcaaaggcttaaaaagctggggttttatgaatgggatcaaa 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1433 tgtttctaagctctcaagatcaaaggcttaaaaagctggggttttatgaatgggatcaaa 1492
Query: 407 gtttctttttttcttttatatttgcttctccatttgtttgtttcatttccctttttgttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gtttctttttttcttttatatttgcttctccatttgtttgtttcatttccctttttgttt 1552
Query: 467 tcgtttctatgatgcacttgtgtgtgacaaactctctgggtttttacttacgtctgcgtt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 tcgtttctatgatgcacttgtgtgtgacaaactctctgggtttttacttacgtctgcgtt 1612
Query: 527 tcaaaaaaaaaaaccgctttcgttttgcgttttagtcccattgttttgtagctctgagtg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1613 tcaaaaaaaaaaaccgctttcgttttgcgttttagtcccattgttttgtagctctgagtg 1672
Query: 587 atcgaattgatgcctctttattccttttgttccctataatttctttcaaaactcagaaga 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1673 atcgaattgatgcctctttattccttttgttccctataatttctttcaaaactcagaaga 1732
Query: 647 aaaaccttgaaactctttgcaatgttaatataagtattgtataagatttttattgatttg 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1733 aaaaccttgaaactctttgcaatgttaatataagtattgtataagatttttattgatttg 1792
Query: 707 gttattagtcttacttttgct 727
|||||||||||||||||||||
Sbjct: 1793 gttattagtcttacttttgct 1813
Score = 573 bits (289), Expect = e-163
Identities = 289/289 (100%)
Strand = Plus / Plus
Query: 1 agaagtcttgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1001 agaagtcttgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaac 1060
Query: 61 ctataactcaatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1061 ctataactcaatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgt 1120
Query: 121 gctcagtggtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1121 gctcagtggtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcac 1180
Query: 181 agcacttgcaccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1181 agcacttgcaccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacag 1240
Query: 241 tgtctggatcggtggttccattcttgcttccctcagcacattccagcag 289
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1241 tgtctggatcggtggttccattcttgcttccctcagcacattccagcag 1289
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 Actin 8
{Arabidopsis thaliana}; nearly identical to SP|Q96292
Actin 2 [Arabidopsis thaliana] GI:1669387, and to
At3g18780
Length = 1654
Score = 426 bits (215), Expect = e-118
Identities = 320/355 (90%)
Strand = Plus / Plus
Query: 1 agaagtcttgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaac 60
||||||| | |||||||| || ||||| |||||||||||||| || ||||||||||||||
Sbjct: 949 agaagtccttttccagccatcatttgttggaatggaagctgcagggatccacgagacaac 1008
Query: 61 ctataactcaatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgt 120
|| ||||| ||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 1009 ttacaactcgatcatgaagtgtgatgttgatatcaggaaggacctttacggtaacattgt 1068
Query: 121 gctcagtggtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcac 180
|||||||||||| || ||||||||||||||||| || ||||||||||||||||| |||||
Sbjct: 1069 gctcagtggtggtacaactatgttctcaggtattgcagaccgtatgagcaaagagatcac 1128
Query: 181 agcacttgcaccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacag 240
||| ||||| || ||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct: 1129 agctcttgccccgagcagcatgaagattaaggtcgtggcaccacccgagaggaagtacag 1188
Query: 241 tgtctggatcggtggttccattcttgcttccctcagcacattccagcagatgtggatctc 300
||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||||||
Sbjct: 1189 tgtctggattggtggttctatccttgcttccctcagcactttccagcagatgtggatctc 1248
Query: 301 caaggccgagtatgatgaggcaggtccaggaatcgttcacagaaaatgtttctaa 355
||||| ||||||||||| ||||||||||| || || ||||||||||| ||||||
Sbjct: 1249 taaggcagagtatgatgaagcaggtccaggcattgtccacagaaaatgcttctaa 1303
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496 Actin 11
{Arabidopsis thaliana}
Length = 1423
Score = 278 bits (140), Expect = 6e-74
Identities = 272/316 (86%)
Strand = Plus / Plus
Query: 9 tgttccagccctcgtttgtgggaatggaagctgctggaatccacgagacaacctataact 68
||||||| || || || |||||||||||||||||||| || |||||||| || || || |
Sbjct: 888 tgttccaaccgtctttggtgggaatggaagctgctggtattcacgagaccacttacaatt 947
Query: 69 caatcatgaagtgtgatgtggatatcaggaaggatctgtacggtaacattgtgctcagtg 128
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 948 ccatcatgaagtgtgatgtggatatcaggaaggatctgtatggaaacattgtgctcagtg 1007
Query: 129 gtggaaccactatgttctcaggtatcgctgaccgtatgagcaaagaaatcacagcacttg 188
|||||||||| |||||| | || || ||||| | ||||||||||| ||||| || | |
Sbjct: 1008 gtggaaccaccatgttccctggaattgctgataggatgagcaaagagatcactgctttgg 1067
Query: 189 caccaagcagcatgaagattaaggtcgttgcaccacctgaaaggaagtacagtgtctgga 248
| ||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||
Sbjct: 1068 ctccaagcagcatgaagattaaggtggttgctccaccagagaggaagtacagtgtctgga 1127
Query: 249 tcggtggttccattcttgcttccctcagcacattccagcagatgtggatctccaaggccg 308
| || || |||||||| || || ||||| || ||||| ||||||||||| | |||||||
Sbjct: 1128 ttggaggctccattctagcatcactcagtaccttccaacagatgtggatagcaaaggccg 1187
Query: 309 agtatgatgaggcagg 324
||||||||||| ||||
Sbjct: 1188 agtatgatgagtcagg 1203
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to SP|P53492 Actin 7
(Actin-2) {Arabidopsis thaliana}
Length = 1631
Score = 254 bits (128), Expect = 9e-67
Identities = 278/328 (84%)
Strand = Plus / Plus
Query: 29 ggaatggaagctgctggaatccacgagacaacctataactcaatcatgaagtgtgatgtg 88
|||||||||||| |||||||||| || ||||| || ||||| |||||||| ||||||||
Sbjct: 911 ggaatggaagctcctggaatccatgaaacaacttacaactccatcatgaaatgtgatgtc 970
Query: 89 gatatcaggaaggatctgtacggtaacattgtgctcagtggtggaaccactatgttctca 148
||||||||||||||||| || || ||||| || ||||||||||| |||| |||||| ||
Sbjct: 971 gatatcaggaaggatctctatggaaacatcgttctcagtggtggttccaccatgttccca 1030
Query: 149 ggtatcgctgaccgtatgagcaaagaaatcacagcacttgcaccaagcagcatgaagatt 208
|| || |||||||||||||||||||| ||||| || |||||||| ||||||||||||||
Sbjct: 1031 ggaattgctgaccgtatgagcaaagagatcaccgctcttgcacctagcagcatgaagatc 1090
Query: 209 aaggtcgttgcaccacctgaaaggaagtacagtgtctggatcggtggttccattcttgct 268
||||| |||||||| || || || || ||||||||||||||||| || || || |||||
Sbjct: 1091 aaggtggttgcaccgccagagagaaaatacagtgtctggatcggaggatcaatccttgca 1150
Query: 269 tccctcagcacattccagcagatgtggatctccaaggccgagtatgatgaggcaggtcca 328
||||||||||| ||||| ||||||||||| || ||| ||||| |||||| ||||||||
Sbjct: 1151 tccctcagcaccttccaacagatgtggatttcaaagagtgagtacgatgagtcaggtcca 1210
Query: 329 ggaatcgttcacagaaaatgtttctaag 356
|| |||||||| ||||| |||||||
Sbjct: 1211 tcgattgttcacaggaaatgcttctaag 1238
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,805
Number of Sequences: 29161
Number of extensions: 32805
Number of successful extensions: 804
Number of sequences better than 10.0: 80
length of query: 727
length of database: 44,058,232
effective HSP length: 17
effective length of query: 710
effective length of database: 43,562,495
effective search space: 30929371450
effective search space used: 30929371450
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)