BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.7.cl.749.Contig1
(1924 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family prot... 3727 0.0
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family prot... 3134 0.0
At2g34810.1 68415.m04274 FAD-binding domain-containing prot... 38 0.27
At5g14340.1 68418.m01676 myb family transcription factor (M... 36 1.1
At5g63680.1 68418.m07994 pyruvate kinase, putative similar ... 34 4.2
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein contains Pfam
profile: PF00270 DEAD/DEAH box helicase
Length = 1919
Score = 3727 bits (1880), Expect = 0.0
Identities = 1916/1923 (99%), Gaps = 4/1923 (0%)
Strand = Plus / Plus
Query: 2 aatccacctttcgatcggaaaatccttctgtttgcgaatctattgggtatatatctctcc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatccacctttcgatcggaaaatccttctgtttgcgaatctattgggtatatatctctcc 60
Query: 62 ttgatgatttgatttgattctattgcattgagattgatatcttgttgcaggggaactctg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttgatgatttgatttgattctattgcattgagattgatatcttgttgcaggggaactctg 120
Query: 122 gttccatgtgttaggtattttcctttcgtcgacctgattcatcttgtgcatgtcgattct 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gttccatgtgttaggtattttcctttcgtcgacctgattcatcttgtgcatgtcgattct 180
Query: 182 gaataatgaacgaagaaggctgcgtcccgcacaactctggttagtctgtgtacctaatag 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaataatgaacgaagaaggctgcgtcccgcacaactctggttagtctgtgtacctaatag 240
Query: 242 taattcgtaaccctccacagagcttactcatccgccgcttttgtattctctttgttgtag 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taattcgtaaccctccacagagcttactcatccgccgcttttgtattctctttgttgtag 300
Query: 302 atgttgttaaacaaaagtctatagatcaaagagcccctctttccggggaacctaaatgtg 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 atgttgttaaacaaaagtctatagatcaaagagcccctctttccggggaacctaaatgtg 360
Query: 362 ttatctgcagtcgttatggtgagtacatatgtgacgagaccaatgatgacgtctgcagcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttatctgcagtcgttatggtgagtacatatgtgacgagaccaatgatgacgtctgcagcc 420
Query: 422 tcgagtgtaagcaagcactcctgagaagggttgacagcgctagagtttttcctgccacag 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tcgagtgtaagcaagcactcctgagaagggttgacagcgctagagtttttcctgccacag 480
Query: 482 atgagtgcttctatgttagagacccaggatcttcttcccacgatgctcaactacttagaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 atgagtgcttctatgttagagacccaggatcttcttcccacgatgctcaactacttagaa 540
Query: 542 gaaagcttgatattcatgtccaaggacaaggatcagcagtcccctccacctgtcttgact 601
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 541 gaaagcttgatattcatgtccaaggacaaggatcagcagtccc-tccacctgtcttgact 599
Query: 602 ttcacttcatgtggacctncctcctaaccttcttctcaacttaaaaacggctggctatga 661
|||||||||||||||| | |||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 600 ttcacttcatgtggac-ttcctcctaagcttcttctcaacttagaaacggctggctatga 658
Query: 662 cttttcctactcctatccagatgcaagcaattccagctgctttaaccggcaaaagtctgc 721
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 cttt-cctactcctatccagatgcaagcaattccagctgctttaaccggcaaaagtctgc 717
Query: 722 tcgcctcagccgacaccggctctgggaaaacagcttcttttcttgttcctattatttctc 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tcgcctcagccgacaccggctctgggaaaacagcttcttttcttgttcctattatttctc 777
Query: 782 gttgcacaacgtatcactctgagcatccctcagaccagaggaggaaccccttggctatgg 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gttgcacaacgtatcactctgagcatccctcagaccagaggaggaaccccttggctatgg 837
Query: 842 ttttggctccaacgagagagctctgtgtccaagttgaagatcaggcaaaaatgctcggaa 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 ttttggctccaacgagagagctctgtgtccaagttgaagatcaggcaaaaatgctcggaa 897
Query: 902 agggactgccatttaagactgcactcgttgtaggtggtgatcccatgtctggacaactct 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 agggactgccatttaagactgcactcgttgtaggtggtgatcccatgtctggacaactct 957
Query: 962 accgcattcagcaaggtgttgaattgatcattggtaccccaggccgggtggtggaccttc 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 accgcattcagcaaggtgttgaattgatcattggtaccccaggccgggtggtggaccttc 1017
Query: 1022 tatcaaagcacaccattgaactagataacatcatgacgtttgtgctggatgaagttgact 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1018 tatcaaagcacaccattgaactagataacatcatgacgtttgtgctggatgaagttgact 1077
Query: 1082 gcatgcttcagagaggcttcagagatcaggtgatgcagatatttcaggccttgtcacaac 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1078 gcatgcttcagagaggcttcagagatcaggtgatgcagatatttcaggccttgtcacaac 1137
Query: 1142 cacaggtcttgctgttctctgcgacgatctcaagagaggtggagaaggtgggagggtctc 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1138 cacaggtcttgctgttctctgcgacgatctcaagagaggtggagaaggtgggagggtctc 1197
Query: 1202 tagccaaggaaatcattttggtatccataggtaatcccaacaagcctaacaaggctgtca 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1198 tagccaaggaaatcattttggtatccataggtaatcccaacaagcctaacaaggctgtca 1257
Query: 1262 accaattggccatctgggtagatgcaaagcaaaagaaacagaagctgtttgatatactca 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1258 accaattggccatctgggtagatgcaaagcaaaagaaacagaagctgtttgatatactca 1317
Query: 1322 gaagtcaaaaccatttcaagccccccgctgttgtttatgtgagttcgagagttggagcag 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1318 gaagtcaaaaccatttcaagccccccgctgttgtttatgtgagttcgagagttggagcag 1377
Query: 1382 atctcctggctaatgccataactgttgtcacgggggtaaaagctctatcgatccatgggg 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1378 atctcctggctaatgccataactgttgtcacgggggtaaaagctctatcgatccatgggg 1437
Query: 1442 agaagccaatgaaggagaggagagacgtaatgggatcgtttttgggtggagaggtgccag 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1438 agaagccaatgaaggagaggagagacgtaatgggatcgtttttgggtggagaggtgccag 1497
Query: 1502 ttcttgtatcaacgggagttctaggccgaggagttgacctattggtggtaaggcaggtga 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1498 ttcttgtatcaacgggagttctaggccgaggagttgacctattggtggtaaggcaggtga 1557
Query: 1562 tagtgtttgacatgcctagtaccatcaaggagtacatacatgtaattggcagggcctcta 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1558 tagtgtttgacatgcctagtaccatcaaggagtacatacatgtaattggcagggcctcta 1617
Query: 1622 ggatgggagagaagggcactgccattgtgtttgtgaatgaggacgacaggaacctattcc 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1618 ggatgggagagaagggcactgccattgtgtttgtgaatgaggacgacaggaacctattcc 1677
Query: 1682 ctgatttagttgccgctttaaaaagtagtggagcagccatacctaaggaacttatcaatt 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1678 ctgatttagttgccgctttaaaaagtagtggagcagccatacctaaggaacttatcaatt 1737
Query: 1742 tgacatccagggaaatgcacaacaagaagagaagggttgggtactgagatgtatgacctg 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1738 tgacatccagggaaatgcacaacaagaagagaagggttgggtactgagatgtatgacctg 1797
Query: 1802 gatccgaatgttgttgtaaattaagaaagaaaggaagacttgagagcattgacgaataga 1861
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1798 gatccgaatgttgttgtaaattaagaaagaaaggaagacttgagagcattgacgaataga 1857
Query: 1862 aaaaattaagggtttaactctgcaaagaaagcataatgacttgtgatttgtccgaacgtt 1921
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1858 aaaaattaagggtttaactctgcaaagaaagcataatgacttgtgatttgt-cgaacgtt 1916
Query: 1922 ttt 1924
|||
Sbjct: 1917 ttt 1919
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein contains Pfam
profile: PF00270 DEAD/DEAH box helicase
Length = 1769
Score = 3134 bits (1581), Expect = 0.0
Identities = 1617/1624 (99%), Gaps = 4/1624 (0%)
Strand = Plus / Plus
Query: 301 gatgttgttaaacaaaagtctatagatcaaagagcccctctttccggggaacctaaatgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gatgttgttaaacaaaagtctatagatcaaagagcccctctttccggggaacctaaatgt 209
Query: 361 gttatctgcagtcgttatggtgagtacatatgtgacgagaccaatgatgacgtctgcagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 gttatctgcagtcgttatggtgagtacatatgtgacgagaccaatgatgacgtctgcagc 269
Query: 421 ctcgagtgtaagcaagcactcctgagaagggttgacagcgctagagtttttcctgccaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ctcgagtgtaagcaagcactcctgagaagggttgacagcgctagagtttttcctgccaca 329
Query: 481 gatgagtgcttctatgttagagacccaggatcttcttcccacgatgctcaactacttaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gatgagtgcttctatgttagagacccaggatcttcttcccacgatgctcaactacttaga 389
Query: 541 agaaagcttgatattcatgtccaaggacaaggatcagcagtcccctccacctgtcttgac 600
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 agaaagcttgatattcatgtccaaggacaaggatcagcagtccc-tccacctgtcttgac 448
Query: 601 tttcacttcatgtggacctncctcctaaccttcttctcaacttaaaaacggctggctatg 660
||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||
Sbjct: 449 tttcacttcatgtggac-ttcctcctaagcttcttctcaacttagaaacggctggctatg 507
Query: 661 acttttcctactcctatccagatgcaagcaattccagctgctttaaccggcaaaagtctg 720
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 acttt-cctactcctatccagatgcaagcaattccagctgctttaaccggcaaaagtctg 566
Query: 721 ctcgcctcagccgacaccggctctgggaaaacagcttcttttcttgttcctattatttct 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcgcctcagccgacaccggctctgggaaaacagcttcttttcttgttcctattatttct 626
Query: 781 cgttgcacaacgtatcactctgagcatccctcagaccagaggaggaaccccttggctatg 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 cgttgcacaacgtatcactctgagcatccctcagaccagaggaggaaccccttggctatg 686
Query: 841 gttttggctccaacgagagagctctgtgtccaagttgaagatcaggcaaaaatgctcgga 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gttttggctccaacgagagagctctgtgtccaagttgaagatcaggcaaaaatgctcgga 746
Query: 901 aagggactgccatttaagactgcactcgttgtaggtggtgatcccatgtctggacaactc 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 aagggactgccatttaagactgcactcgttgtaggtggtgatcccatgtctggacaactc 806
Query: 961 taccgcattcagcaaggtgttgaattgatcattggtaccccaggccgggtggtggacctt 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 taccgcattcagcaaggtgttgaattgatcattggtaccccaggccgggtggtggacctt 866
Query: 1021 ctatcaaagcacaccattgaactagataacatcatgacgtttgtgctggatgaagttgac 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 ctatcaaagcacaccattgaactagataacatcatgacgtttgtgctggatgaagttgac 926
Query: 1081 tgcatgcttcagagaggcttcagagatcaggtgatgcagatatttcaggccttgtcacaa 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 tgcatgcttcagagaggcttcagagatcaggtgatgcagatatttcaggccttgtcacaa 986
Query: 1141 ccacaggtcttgctgttctctgcgacgatctcaagagaggtggagaaggtgggagggtct 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 ccacaggtcttgctgttctctgcgacgatctcaagagaggtggagaaggtgggagggtct 1046
Query: 1201 ctagccaaggaaatcattttggtatccataggtaatcccaacaagcctaacaaggctgtc 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 ctagccaaggaaatcattttggtatccataggtaatcccaacaagcctaacaaggctgtc 1106
Query: 1261 aaccaattggccatctgggtagatgcaaagcaaaagaaacagaagctgtttgatatactc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 aaccaattggccatctgggtagatgcaaagcaaaagaaacagaagctgtttgatatactc 1166
Query: 1321 agaagtcaaaaccatttcaagccccccgctgttgtttatgtgagttcgagagttggagca 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 agaagtcaaaaccatttcaagccccccgctgttgtttatgtgagttcgagagttggagca 1226
Query: 1381 gatctcctggctaatgccataactgttgtcacgggggtaaaagctctatcgatccatggg 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 gatctcctggctaatgccataactgttgtcacgggggtaaaagctctatcgatccatggg 1286
Query: 1441 gagaagccaatgaaggagaggagagacgtaatgggatcgtttttgggtggagaggtgcca 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1287 gagaagccaatgaaggagaggagagacgtaatgggatcgtttttgggtggagaggtgcca 1346
Query: 1501 gttcttgtatcaacgggagttctaggccgaggagttgacctattggtggtaaggcaggtg 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1347 gttcttgtatcaacgggagttctaggccgaggagttgacctattggtggtaaggcaggtg 1406
Query: 1561 atagtgtttgacatgcctagtaccatcaaggagtacatacatgtaattggcagggcctct 1620
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1407 atagtgtttgacatgcctagtaccatcaaggagtacatacatgtaattggcagggcctct 1466
Query: 1621 aggatgggagagaagggcactgccattgtgtttgtgaatgaggacgacaggaacctattc 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1467 aggatgggagagaagggcactgccattgtgtttgtgaatgaggacgacaggaacctattc 1526
Query: 1681 cctgatttagttgccgctttaaaaagtagtggagcagccatacctaaggaacttatcaat 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 cctgatttagttgccgctttaaaaagtagtggagcagccatacctaaggaacttatcaat 1586
Query: 1741 ttgacatccagggaaatgcacaacaagaagagaagggttgggtactgagatgtatgacct 1800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ttgacatccagggaaatgcacaacaagaagagaagggttgggtactgagatgtatgacct 1646
Query: 1801 ggatccgaatgttgttgtaaattaagaaagaaaggaagacttgagagcattgacgaatag 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 ggatccgaatgttgttgtaaattaagaaagaaaggaagacttgagagcattgacgaatag 1706
Query: 1861 aaaaaattaagggtttaactctgcaaagaaagcataatgacttgtgatttgtccgaacgt 1920
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1707 aaaaaattaagggtttaactctgcaaagaaagcataatgacttgtgatttgt-cgaacgt 1765
Query: 1921 tttt 1924
||||
Sbjct: 1766 tttt 1769
Score = 218 bits (110), Expect = 1e-55
Identities = 110/110 (100%)
Strand = Plus / Plus
Query: 111 ggggaactctggttccatgtgttaggtattttcctttcgtcgacctgattcatcttgtgc 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 ggggaactctggttccatgtgttaggtattttcctttcgtcgacctgattcatcttgtgc 100
Query: 171 atgtcgattctgaataatgaacgaagaaggctgcgtcccgcacaactctg 220
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 atgtcgattctgaataatgaacgaagaaggctgcgtcccgcacaactctg 150
Score = 83.8 bits (42), Expect = 5e-15
Identities = 42/42 (100%)
Strand = Plus / Plus
Query: 7 acctttcgatcggaaaatccttctgtttgcgaatctattggg 48
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acctttcgatcggaaaatccttctgtttgcgaatctattggg 42
>At2g34810.1 68415.m04274 FAD-binding domain-containing protein similar to
SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 1807
Score = 38.2 bits (19), Expect = 0.27
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 37 gaatctattgggtatatat 55
|||||||||||||||||||
Sbjct: 1757 gaatctattgggtatatat 1775
>At5g14340.1 68418.m01676 myb family transcription factor (MYB40) contains Pfam
profile: PF00249 myb-like DNA-binding domain
Length = 860
Score = 36.2 bits (18), Expect = 1.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1166 cgatctcaagagaggtgg 1183
||||||||||||||||||
Sbjct: 189 cgatctcaagagaggtgg 206
>At5g63680.1 68418.m07994 pyruvate kinase, putative similar to pyruvate kinase,
cytosolic isozyme [Glycine max] SWISS-PROT:Q42806
Length = 1880
Score = 34.2 bits (17), Expect = 4.2
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 1668 caggaacctattccctg 1684
|||||||||||||||||
Sbjct: 1744 caggaacctattccctg 1728
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 55,061
Number of Sequences: 29161
Number of extensions: 55061
Number of successful extensions: 1181
Number of sequences better than 10.0: 21
length of query: 1924
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1906
effective length of database: 43,533,334
effective search space: 82974534604
effective search space used: 82974534604
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)