BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.7.cl.737.Contig1
(1470 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g32020.1 68417.m04558 expressed protein NuLL 2914 0.0
At2g25250.1 68415.m03021 expressed protein 52 1e-05
At2g38130.2 68415.m04681 GCN5-related N-acetyltransferase, ... 44 0.003
At2g38130.1 68415.m04680 GCN5-related N-acetyltransferase, ... 44 0.003
At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) ... 42 0.013
>At4g32020.1 68417.m04558 expressed protein NuLL
Length = 1507
Score = 2914 bits (1470), Expect = 0.0
Identities = 1470/1470 (100%)
Strand = Plus / Plus
Query: 1 ccgagccgttgagaattttttctgagagataatttaacaaatttcttcttcttcttctgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 38 ccgagccgttgagaattttttctgagagataatttaacaaatttcttcttcttcttctgt 97
Query: 61 ttctgaaccaccaaatctgcctttctcaattagctatgggcgtcgctgttctaaatcccc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 ttctgaaccaccaaatctgcctttctcaattagctatgggcgtcgctgttctaaatcccc 157
Query: 121 aggattgcttgaaagatccattctctcacatgaaacaacatcgtaatcctagcgcatgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 aggattgcttgaaagatccattctctcacatgaaacaacatcgtaatcctagcgcatgtc 217
Query: 181 ccaacaggcagaagaagacggtctccaacaaccgtacacgccggagtcctcctcgtagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 ccaacaggcagaagaagacggtctccaacaaccgtacacgccggagtcctcctcgtagtc 277
Query: 241 aatcctccagatcttcttctcctcctgtagcgccgccgcttcctcctcctcgtgcggctg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 aatcctccagatcttcttctcctcctgtagcgccgccgcttcctcctcctcgtgcggctg 337
Query: 301 tctctgctttcgttccaaagggaacccttaagaagagtcttagcaataccgttgccgtta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctctgctttcgttccaaagggaacccttaagaagagtcttagcaataccgttgccgtta 397
Query: 361 gccaggtgagaatccttaagcgcggcgaagaaatccccaaggagacttcagatctggttg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 gccaggtgagaatccttaagcgcggcgaagaaatccccaaggagacttcagatctggttg 457
Query: 421 tggaaatgtcagatctgggatctactcgtcggattggaccagatccgggtttgattccgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tggaaatgtcagatctgggatctactcgtcggattggaccagatccgggtttgattccgg 517
Query: 481 gtcagatccgtttatctggccgcaaatcgaaatcagcaccgttttacgccggtcctgtga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gtcagatccgtttatctggccgcaaatcgaaatcagcaccgttttacgccggtcctgtga 577
Query: 541 ccatgacctcgccgcctcctagcgatgtcccgcttccagctttcttcacgaagaaggcaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 ccatgacctcgccgcctcctagcgatgtcccgcttccagctttcttcacgaagaaggcaa 637
Query: 601 caaatgatctcatcaggatccttcgcctagacatcgcctgacggtgtctgtcaccgatca 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 caaatgatctcatcaggatccttcgcctagacatcgcctgacggtgtctgtcaccgatca 697
Query: 661 tttttgattttttaaaaatctccgatgatccaaatggttaccaaagtgttacatttccgt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 tttttgattttttaaaaatctccgatgatccaaatggttaccaaagtgttacatttccgt 757
Query: 721 attaccgatcgtccgattccgcctgaaaaccggagatctgcaacaaaatataatctccag 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 attaccgatcgtccgattccgcctgaaaaccggagatctgcaacaaaatataatctccag 817
Query: 781 acgatgatgaatctagaagatgaagaaacacacatcttcgttatgaaccgtttcgaatct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 acgatgatgaatctagaagatgaagaaacacacatcttcgttatgaaccgtttcgaatct 877
Query: 841 tcccttattttttcaaggggcaagatcgaaatatcttcttaacaggtcttagtttctctt 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 tcccttattttttcaaggggcaagatcgaaatatcttcttaacaggtcttagtttctctt 937
Query: 901 cttagggtttagtgtttgtgtaggagtatttgtgtatagactttttactagttttcgtat 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 938 cttagggtttagtgtttgtgtaggagtatttgtgtatagactttttactagttttcgtat 997
Query: 961 ctttctctgtatcttcgggtttttaatttctgcttaatcgtcaggttctctgggtaaatc 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 998 ctttctctgtatcttcgggtttttaatttctgcttaatcgtcaggttctctgggtaaatc 1057
Query: 1021 ataggttggcttttgtcatttcgtctgtgtcttaagtggattagttggtcgtaagacaag 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1058 ataggttggcttttgtcatttcgtctgtgtcttaagtggattagttggtcgtaagacaag 1117
Query: 1081 ttatagagatgtgtttacgggtaaagatgaagcttaggttttgatgtaatcttcttcggt 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1118 ttatagagatgtgtttacgggtaaagatgaagcttaggttttgatgtaatcttcttcggt 1177
Query: 1141 ttttcaattctctgtatttctctatctttttagtttatcaagtttaagttttatttgggg 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1178 ttttcaattctctgtatttctctatctttttagtttatcaagtttaagttttatttgggg 1237
Query: 1201 tttcttcttcgtttgggtatctttctgtttttccttaaggttcttcgtttgtttccgtgt 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 tttcttcttcgtttgggtatctttctgtttttccttaaggttcttcgtttgtttccgtgt 1297
Query: 1261 cgtctaggttaagtcaaagtaaagagatgtaattactggttagatgaatcttaaggtttc 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 cgtctaggttaagtcaaagtaaagagatgtaattactggttagatgaatcttaaggtttc 1357
Query: 1321 catgtaaccgtttgtactacaattctctgtacttctctatctttaatattatcgaattta 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1358 catgtaaccgtttgtactacaattctctgtacttctctatctttaatattatcgaattta 1417
Query: 1381 agttttatctttggcgtttaaagttcagtatttggacatttgatacacatcacatgagat 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1418 agttttatctttggcgtttaaagttcagtatttggacatttgatacacatcacatgagat 1477
Query: 1441 taaataagatggttgacccaataaaaccat 1470
||||||||||||||||||||||||||||||
Sbjct: 1478 taaataagatggttgacccaataaaaccat 1507
>At2g25250.1 68415.m03021 expressed protein
Length = 865
Score = 52.0 bits (26), Expect = 1e-05
Identities = 53/58 (91%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 815 tcttcgttatgaaccgttt-cgaat-cttcccttattttttcaaggggcaagatcgaa 870
||||||||||||| ||||| ||||| |||| ||||||||||||||||| |||||||||
Sbjct: 645 tcttcgttatgaaacgttttcgaattcttctcttattttttcaagggg-aagatcgaa 701
>At2g38130.2 68415.m04681 GCN5-related N-acetyltransferase, putative similar to
SP|Q03503 L-A virus GAG protein N-acetyltransferase (EC
2.3.1.-) {Saccharomyces cerevisiae}; contains Pfam
profile PF00583: acetyltransferase, GNAT family
Length = 844
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 801 tgaagaaacacacatcttcgtt 822
||||||||||||||||||||||
Sbjct: 746 tgaagaaacacacatcttcgtt 725
>At2g38130.1 68415.m04680 GCN5-related N-acetyltransferase, putative similar to
SP|Q03503 L-A virus GAG protein N-acetyltransferase (EC
2.3.1.-) {Saccharomyces cerevisiae}; contains Pfam
profile PF00583: acetyltransferase, GNAT family
Length = 891
Score = 44.1 bits (22), Expect = 0.003
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 801 tgaagaaacacacatcttcgtt 822
||||||||||||||||||||||
Sbjct: 793 tgaagaaacacacatcttcgtt 772
>At3g57480.1 68416.m06399 zinc finger (C2H2 type, AN1-like) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type;
contains Pfam domain, PF01428: AN1-like Zinc finger
Length = 1128
Score = 42.1 bits (21), Expect = 0.013
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 37 acaaatttcttcttcttcttc 57
|||||||||||||||||||||
Sbjct: 24 acaaatttcttcttcttcttc 44
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 78,711
Number of Sequences: 29161
Number of extensions: 78711
Number of successful extensions: 7023
Number of sequences better than 10.0: 372
length of query: 1470
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1452
effective length of database: 43,533,334
effective search space: 63210400968
effective search space used: 63210400968
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)