BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.6.cl.631.Contig1
(434 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutam... 829 0.0
At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutam... 96 3e-19
At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutam... 96 3e-19
At5g65490.1 68418.m08236 expressed protein similar to unkno... 36 0.23
At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) fami... 36 0.23
>At5g17920.1 68418.m02101 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase / vitamin-B12-independent methionine
synthase / cobalamin-independent methionine synthase
(CIMS) identical to SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana}
Length = 2682
Score = 829 bits (418), Expect = 0.0
Identities = 431/434 (99%), Gaps = 1/434 (0%)
Strand = Plus / Plus
Query: 1 ttgctgtcctagaccagaacatccttttggttaaccctgactgtg-tctcaagacccgta 59
||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 2248 ttgctgtcctagagcagaacatcctttgggttaaccctgactgtggtctcaagacccgta 2307
Query: 60 agtacaccgaggtcaagcctgcactcaagaacatggttgatgcggctaagctcatccgct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2308 agtacaccgaggtcaagcctgcactcaagaacatggttgatgcggctaagctcatccgct 2367
Query: 120 cccagctcgccagtgccaagtgaagaaaagcttgatttgaacaaggaaacgttttttttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2368 cccagctcgccagtgccaagtgaagaaaagcttgatttgaacaaggaaacgttttttttt 2427
Query: 180 ctctaaaatggttgtgttttatttggtttaataactttcttaaaaatatttttagtcgaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2428 ctctaaaatggttgtgttttatttggtttaataactttcttaaaaatatttttagtcgaa 2487
Query: 240 ggtagatttgatgcatatggtttctttcttgttgagagagagaaaggctatagcatcctt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2488 ggtagatttgatgcatatggtttctttcttgttgagagagagaaaggctatagcatcctt 2547
Query: 300 tggatttgatgcaatgtttgtgattttctttttgtctccaatatatttctctgatggaat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2548 tggatttgatgcaatgtttgtgattttctttttgtctccaatatatttctctgatggaat 2607
Query: 360 gtcttttttctaaagtatcttgaaaaggaataagaggattgattcttatacaaatacttt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2608 gtcttttttctaaagtatcttgaaaaggaataagaggattgattcttatacaaatacttt 2667
Query: 420 tgtttgcgttgtcc 433
||||||||||||||
Sbjct: 2668 tgtttgcgttgtcc 2681
>At3g03780.2 68416.m00387 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 2608
Score = 95.6 bits (48), Expect = 3e-19
Identities = 112/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 15 cagaacatccttttggttaaccctgactgtg-tctcaagacccgtaagtacaccgaggtc 73
||||||||| | | ||||||||||||||||| ||| ||||| | |||||||| |||||
Sbjct: 2242 cagaacatcttgtgggttaaccctgactgtggtctgaagacaaggaagtacactgaggtt 2301
Query: 74 aagcctgcactcaagaacatggttgatgcggctaagctcatccgctcccagctcgccagt 133
|| || ||||| || ||||||||| ||||||||||| |||||||||||||||| |||
Sbjct: 2302 aaaccagcacttaaagccatggttgacgcggctaagcttatccgctcccagctcggtagt 2361
Query: 134 gccaagtgaaga 145
||||||||||||
Sbjct: 2362 gccaagtgaaga 2373
>At3g03780.1 68416.m00386 5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase, putative / vitamin-B12-independent
methionine synthase, putative / cobalamin-independent
methionine synthase, putative very strong similarity to
SP|O50008
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase (EC 2.1.1.14) (Vitamin-B12-independent
methionine synthase isozyme) (Cobalamin-independent
methionine synthase isozyme) {Arabidopsis thaliana};
contains Pfam profile PF01717: Methionine synthase,
vitamin-B12 independent
Length = 2615
Score = 95.6 bits (48), Expect = 3e-19
Identities = 112/132 (84%), Gaps = 1/132 (0%)
Strand = Plus / Plus
Query: 15 cagaacatccttttggttaaccctgactgtg-tctcaagacccgtaagtacaccgaggtc 73
||||||||| | | ||||||||||||||||| ||| ||||| | |||||||| |||||
Sbjct: 2249 cagaacatcttgtgggttaaccctgactgtggtctgaagacaaggaagtacactgaggtt 2308
Query: 74 aagcctgcactcaagaacatggttgatgcggctaagctcatccgctcccagctcgccagt 133
|| || ||||| || ||||||||| ||||||||||| |||||||||||||||| |||
Sbjct: 2309 aaaccagcacttaaagccatggttgacgcggctaagcttatccgctcccagctcggtagt 2368
Query: 134 gccaagtgaaga 145
||||||||||||
Sbjct: 2369 gccaagtgaaga 2380
>At5g65490.1 68418.m08236 expressed protein similar to unknown protein (dbj
BAA75199.1)
Length = 2440
Score = 36.2 bits (18), Expect = 0.23
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 271 ttgagagagagaaaggct 288
||||||||||||||||||
Sbjct: 203 ttgagagagagaaaggct 186
>At5g65320.1 68418.m08217 basic helix-loop-helix (bHLH) family protein contains
similarity to bHLH DNA-binding protein
Length = 1176
Score = 36.2 bits (18), Expect = 0.23
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 270 gttgagagagagaaaggctata 291
||||||||||||| ||||||||
Sbjct: 64 gttgagagagagagaggctata 85
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,388
Number of Sequences: 29161
Number of extensions: 20388
Number of successful extensions: 1842
Number of sequences better than 10.0: 42
length of query: 434
length of database: 44,058,232
effective HSP length: 17
effective length of query: 417
effective length of database: 43,562,495
effective search space: 18165560415
effective search space used: 18165560415
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)