BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.566.Contig1
(884 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, p... 1737 0.0
At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, p... 1737 0.0
At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, p... 70 3e-11
At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, p... 70 3e-11
At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family ... 36 0.49
>At2g42600.2 68415.m05272 phosphoenolpyruvate carboxylase, putative / PEP
carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 3309
Score = 1737 bits (876), Expect = 0.0
Identities = 883/884 (99%), Gaps = 1/884 (0%)
Strand = Plus / Plus
Query: 1 cgagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2427 cgagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaat 2486
Query: 61 cgagtcgctgcgtgcaatcccgtggatctttgcgtggactcagacgaggtttcacttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2487 cgagtcgctgcgtgcaatcccgtggatctttgcgtggactcagacgaggtt-cacttacc 2545
Query: 121 cgtgtggcttggctttggaggagcattcaaacgcgtgatacagaaggacagtaagaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2546 cgtgtggcttggctttggaggagcattcaaacgcgtgatacagaaggacagtaagaatct 2605
Query: 181 caacatgctcaaagagatgtacaaccaatggccattcttccgtgtcacaattgatctagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2606 caacatgctcaaagagatgtacaaccaatggccattcttccgtgtcacaattgatctagt 2665
Query: 241 cgaaatggttttcgccaaaggagatcccggaattgcggctctgtatgaccgcctcctcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2666 cgaaatggttttcgccaaaggagatcccggaattgcggctctgtatgaccgcctcctcgt 2725
Query: 301 ctctgaagaacttcaaccattcggtgaacaacttcgagttaactaccaagagaccagacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2726 ctctgaagaacttcaaccattcggtgaacaacttcgagttaactaccaagagaccagacg 2785
Query: 361 cctcctcctccaggttgcaggtcacaaagacattttagaaggtgacccttacttgaggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2786 cctcctcctccaggttgcaggtcacaaagacattttagaaggtgacccttacttgaggca 2845
Query: 421 aaggctgcagcttcgtgacccatacatcacgacattgaacgtgtgtcaagcctatacact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2846 aaggctgcagcttcgtgacccatacatcacgacattgaacgtgtgtcaagcctatacact 2905
Query: 481 caagcagatccgtgacccaagcttccacgtcaaagtccggccacatctctctaaggacta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2906 caagcagatccgtgacccaagcttccacgtcaaagtccggccacatctctctaaggacta 2965
Query: 541 catggagtctagtccagcggctgagctcgtgaaactgaatccaaagagtgaatacgcacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2966 catggagtctagtccagcggctgagctcgtgaaactgaatccaaagagtgaatacgcacc 3025
Query: 601 gggacttgaagatacggttatcctcaccatgaagggtatcgctgctggtatgcaaaacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3026 gggacttgaagatacggttatcctcaccatgaagggtatcgctgctggtatgcaaaacac 3085
Query: 661 cggttaaggcagtttaaaacgttcttgtaccattccctaaatctacgctatgtaatgtat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3086 cggttaaggcagtttaaaacgttcttgtaccattccctaaatctacgctatgtaatgtat 3145
Query: 721 tatgttctatgatgtgatgaaatctctccaactcctatcccgtacgctttttaatgagta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3146 tatgttctatgatgtgatgaaatctctccaactcctatcccgtacgctttttaatgagta 3205
Query: 781 tgataatttcttgtgttattctattgttgttatgttaccatatctaggaaatatatttct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3206 tgataatttcttgtgttattctattgttgttatgttaccatatctaggaaatatatttct 3265
Query: 841 gaaagaaacaagaaaagaaatctttcttttcgttctaagatgtt 884
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3266 gaaagaaacaagaaaagaaatctttcttttcgttctaagatgtt 3309
>At2g42600.1 68415.m05271 phosphoenolpyruvate carboxylase, putative / PEP
carboxylase, putative (PPC2) strong similarity to
phosphoenolpyruvate carboxylase [Brassica napus]
GI:507808; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 3414
Score = 1737 bits (876), Expect = 0.0
Identities = 883/884 (99%), Gaps = 1/884 (0%)
Strand = Plus / Plus
Query: 1 cgagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2532 cgagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaat 2591
Query: 61 cgagtcgctgcgtgcaatcccgtggatctttgcgtggactcagacgaggtttcacttacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 2592 cgagtcgctgcgtgcaatcccgtggatctttgcgtggactcagacgaggtt-cacttacc 2650
Query: 121 cgtgtggcttggctttggaggagcattcaaacgcgtgatacagaaggacagtaagaatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2651 cgtgtggcttggctttggaggagcattcaaacgcgtgatacagaaggacagtaagaatct 2710
Query: 181 caacatgctcaaagagatgtacaaccaatggccattcttccgtgtcacaattgatctagt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2711 caacatgctcaaagagatgtacaaccaatggccattcttccgtgtcacaattgatctagt 2770
Query: 241 cgaaatggttttcgccaaaggagatcccggaattgcggctctgtatgaccgcctcctcgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2771 cgaaatggttttcgccaaaggagatcccggaattgcggctctgtatgaccgcctcctcgt 2830
Query: 301 ctctgaagaacttcaaccattcggtgaacaacttcgagttaactaccaagagaccagacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2831 ctctgaagaacttcaaccattcggtgaacaacttcgagttaactaccaagagaccagacg 2890
Query: 361 cctcctcctccaggttgcaggtcacaaagacattttagaaggtgacccttacttgaggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2891 cctcctcctccaggttgcaggtcacaaagacattttagaaggtgacccttacttgaggca 2950
Query: 421 aaggctgcagcttcgtgacccatacatcacgacattgaacgtgtgtcaagcctatacact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2951 aaggctgcagcttcgtgacccatacatcacgacattgaacgtgtgtcaagcctatacact 3010
Query: 481 caagcagatccgtgacccaagcttccacgtcaaagtccggccacatctctctaaggacta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3011 caagcagatccgtgacccaagcttccacgtcaaagtccggccacatctctctaaggacta 3070
Query: 541 catggagtctagtccagcggctgagctcgtgaaactgaatccaaagagtgaatacgcacc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3071 catggagtctagtccagcggctgagctcgtgaaactgaatccaaagagtgaatacgcacc 3130
Query: 601 gggacttgaagatacggttatcctcaccatgaagggtatcgctgctggtatgcaaaacac 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3131 gggacttgaagatacggttatcctcaccatgaagggtatcgctgctggtatgcaaaacac 3190
Query: 661 cggttaaggcagtttaaaacgttcttgtaccattccctaaatctacgctatgtaatgtat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3191 cggttaaggcagtttaaaacgttcttgtaccattccctaaatctacgctatgtaatgtat 3250
Query: 721 tatgttctatgatgtgatgaaatctctccaactcctatcccgtacgctttttaatgagta 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3251 tatgttctatgatgtgatgaaatctctccaactcctatcccgtacgctttttaatgagta 3310
Query: 781 tgataatttcttgtgttattctattgttgttatgttaccatatctaggaaatatatttct 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3311 tgataatttcttgtgttattctattgttgttatgttaccatatctaggaaatatatttct 3370
Query: 841 gaaagaaacaagaaaagaaatctttcttttcgttctaagatgtt 884
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3371 gaaagaaacaagaaaagaaatctttcttttcgttctaagatgtt 3414
>At3g14940.1 68416.m01890 phosphoenolpyruvate carboxylase, putative / PEP
carboxylase, putative strong similarity to SP|P29196
Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCASE)
{Solanum tuberosum}; contains Pfam profile PF00311:
phosphoenolpyruvate carboxylase
Length = 3313
Score = 69.9 bits (35), Expect = 3e-11
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 586 gagtgaatacgcaccgggacttgaagatacggttatcctcaccatgaagggtatcgctgc 645
|||||||||||| || |||||||| || || ||||| | |||||||||||||| |||||
Sbjct: 2999 gagtgaatacgcgcctggacttgaggacacacttatcttaaccatgaagggtattgctgc 3058
Query: 646 tggtatgcaaaacaccggttaag 668
|| ||||||||||||||||||
Sbjct: 3059 aggattgcaaaacaccggttaag 3081
Score = 67.9 bits (34), Expect = 1e-10
Identities = 82/98 (83%)
Strand = Plus / Plus
Query: 2 gagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaatc 61
||||||||| | ||||| || ||||| |||| ||||| || ||||||||||| || |||
Sbjct: 2412 gagtatggacgtatgaatattggaagtagaccttcaaagcgaaaaccaagcggtgggatc 2471
Query: 62 gagtcgctgcgtgcaatcccgtggatctttgcgtggac 99
|| || || ||||||||||| ||||||||||| |||||
Sbjct: 2472 gaatctctccgtgcaatcccatggatctttgcttggac 2509
>At1g53310.1 68414.m06042 phosphoenolpyruvate carboxylase, putative / PEP
carboxylase, putative (PPC1) strong similarity to
SP|P29196 Phosphoenolpyruvate carboxylase (EC 4.1.1.31)
(PEPCASE) {Solanum tuberosum}; contains Pfam profile
PF00311: phosphoenolpyruvate carboxylase
Length = 3204
Score = 69.9 bits (35), Expect = 3e-11
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 590 gaatacgcaccgggacttgaagatacggttatcctcaccatgaagggtatcgctgctggt 649
|||||||| || |||||||||||||| | ||| | || ||||||||||| |||||||||
Sbjct: 2893 gaatacgcgccaggacttgaagatacactcatcttgacgatgaagggtattgctgctggt 2952
Query: 650 atgcaaaacaccggttaag 668
| ||||||||||||||||
Sbjct: 2953 ctacaaaacaccggttaag 2971
Score = 65.9 bits (33), Expect = 5e-10
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 185 atgctcaaagagatgtacaaccaatggccattcttccgtgtcacaattgatctagtcgaa 244
|||||| |||| |||||| | || ||||| ||||| | ||||| ||||||||| |||||
Sbjct: 2485 atgctccaagatatgtaccaacactggcctttctttagagtcaccattgatctaatcgaa 2544
Query: 245 atggttttcgccaaaggagatcccggaattgcggctctgta 285
||||| ||||| ||||||||||| || ||||| ||| ||||
Sbjct: 2545 atggtgttcgctaaaggagatcctggtattgctgctttgta 2585
Score = 58.0 bits (29), Expect = 1e-07
Identities = 83/101 (82%)
Strand = Plus / Plus
Query: 2 gagtatggaaggatgaacataggaagccgaccatcaaaacgtaaaccaagcggaggaatc 61
||||||||| | ||||| || |||||| |||| || || |||||||||||||| || ||
Sbjct: 2302 gagtatggacgtatgaatatcggaagcagaccttcgaagcgtaaaccaagcggtggcatt 2361
Query: 62 gagtcgctgcgtgcaatcccgtggatctttgcgtggactca 102
|| || || |||||||| || |||||||| || ||||||||
Sbjct: 2362 gaatctctccgtgcaattccatggatcttcgcttggactca 2402
>At2g23580.1 68415.m02814 hydrolase, alpha/beta fold family protein similar to
ethylene-induced esterase [Citrus sinensis] GI:14279437,
polyneuridine aldehyde esterase [Rauvolfia serpentina]
GI:6651393; contains Pfam profile PF00561: hydrolase,
alpha/beta fold family
Length = 1109
Score = 36.2 bits (18), Expect = 0.49
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 768 tttttaatgagtatgataattt 789
||||||||||||||||| ||||
Sbjct: 873 tttttaatgagtatgattattt 852
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,828
Number of Sequences: 29161
Number of extensions: 25828
Number of successful extensions: 569
Number of sequences better than 10.0: 48
length of query: 884
length of database: 44,058,232
effective HSP length: 18
effective length of query: 866
effective length of database: 43,533,334
effective search space: 37699867244
effective search space used: 37699867244
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)