BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.556.Contig3
(855 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67090.1 68414.m07629 ribulose bisphosphate carboxylase ... 1687 0.0
At1g67090.2 68414.m07630 ribulose bisphosphate carboxylase ... 1635 0.0
At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase ... 672 0.0
At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase ... 672 0.0
At5g38430.1 68418.m04645 ribulose bisphosphate carboxylase ... 668 0.0
>At1g67090.1 68414.m07629 ribulose bisphosphate carboxylase small chain 1A /
RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to
SP|P10795 Ribulose bisphosphate carboxylase small chain
1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small
subunit 1A) {Arabidopsis thaliana}
Length = 878
Score = 1687 bits (851), Expect = 0.0
Identities = 854/855 (99%)
Strand = Plus / Plus
Query: 1 gaacaatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gaacaatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggcca 83
Query: 61 ctatggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctatggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaagg 143
Query: 121 ctaacaacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctaacaacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgt 203
Query: 181 ggcctccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggcctccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgatt 263
Query: 241 ccgaattggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgaattggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaat 323
Query: 301 tcgagttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcgagttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatg 383
Query: 361 gacggtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacggtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgt 443
Query: 421 tgaaggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaaggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggat 503
Query: 481 tcgacaacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tcgacaacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttca 563
Query: 541 ccggttaatttccctttgcttttgtgtaaacctcaaaactttatcccccatctttgattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccggttaatttccctttgcttttgtgtaaacctcaaaactttatcccccatctttgattt 623
Query: 601 tatcccttgtttttctgcttttttcttctttcttgggttttaatttccggacttaacgtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tatcccttgtttttctgcttttttcttctttcttgggttttaatttccggacttaacgtt 683
Query: 661 tgttttccggtttgcgagacatattctatcggattctcaactgtctgatgaaataaatat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgttttccggtttgcgagacatattctatcggattctcaactgtctgatgaaataaatat 743
Query: 721 gtaatgttctataagtctttcaatttgatatgcatatcaacaaaaagaaaataggacaat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 gtaatgttctataagtctttcaatttgatatgcatatcaacaaaaagaaaataggacaat 803
Query: 781 gcggctacaaatatgaaatttacaagtttaagaaccatcagtcgctaaagaaatcattaa 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 804 gcggctacaaatatgaaatttacaagtttaagaaccatgagtcgctaaagaaatcattaa 863
Query: 841 gaaaattagtttcac 855
|||||||||||||||
Sbjct: 864 gaaaattagtttcac 878
Score = 32.2 bits (16), Expect = 7.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 745 ttgatatgcatatcaa 760
||||||||||||||||
Sbjct: 783 ttgatatgcatatcaa 768
>At1g67090.2 68414.m07630 ribulose bisphosphate carboxylase small chain 1A /
RuBisCO small subunit 1A (RBCS-1A) (ATS1A) identical to
SP|P10795 Ribulose bisphosphate carboxylase small chain
1A, chloroplast precursor (EC 4.1.1.39) (RuBisCO small
subunit 1A) {Arabidopsis thaliana}
Length = 871
Score = 1635 bits (825), Expect = 0.0
Identities = 847/855 (99%), Gaps = 7/855 (0%)
Strand = Plus / Plus
Query: 1 gaacaatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gaacaatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggcca 83
Query: 61 ctatggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ctatggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaagg 143
Query: 121 ctaacaacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctaacaacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgt 203
Query: 181 ggcctccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggcctccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgatt 263
Query: 241 ccgaattggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ccgaattggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaat 323
Query: 301 tcgagttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatg 360
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcga-------cacggatttgtgtaccgtgagcacggtaactcacccggatactatgatg 376
Query: 361 gacggtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacggtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgt 436
Query: 421 tgaaggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgaaggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggat 496
Query: 481 tcgacaacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tcgacaacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttca 556
Query: 541 ccggttaatttccctttgcttttgtgtaaacctcaaaactttatcccccatctttgattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ccggttaatttccctttgcttttgtgtaaacctcaaaactttatcccccatctttgattt 616
Query: 601 tatcccttgtttttctgcttttttcttctttcttgggttttaatttccggacttaacgtt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tatcccttgtttttctgcttttttcttctttcttgggttttaatttccggacttaacgtt 676
Query: 661 tgttttccggtttgcgagacatattctatcggattctcaactgtctgatgaaataaatat 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tgttttccggtttgcgagacatattctatcggattctcaactgtctgatgaaataaatat 736
Query: 721 gtaatgttctataagtctttcaatttgatatgcatatcaacaaaaagaaaataggacaat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gtaatgttctataagtctttcaatttgatatgcatatcaacaaaaagaaaataggacaat 796
Query: 781 gcggctacaaatatgaaatttacaagtttaagaaccatcagtcgctaaagaaatcattaa 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 797 gcggctacaaatatgaaatttacaagtttaagaaccatgagtcgctaaagaaatcattaa 856
Query: 841 gaaaattagtttcac 855
|||||||||||||||
Sbjct: 857 gaaaattagtttcac 871
Score = 32.2 bits (16), Expect = 7.3
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 745 ttgatatgcatatcaa 760
||||||||||||||||
Sbjct: 776 ttgatatgcatatcaa 761
>At5g38420.1 68418.m04644 ribulose bisphosphate carboxylase small chain 2B /
RuBisCO small subunit 2B (RBCS-2B) (ATS2B) identical to
SP|P10797 Ribulose bisphosphate carboxylase small chain
2B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small
subunit 2B) {Arabidopsis thaliana}
Length = 837
Score = 672 bits (339), Expect = 0.0
Identities = 489/539 (90%)
Strand = Plus / Plus
Query: 5 aatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggccactat 64
|||||||||||||||| |||| ||| | || ||||| |||| |||||||| ||||| ||
Sbjct: 51 aatggcttcctctatgttctcctccaccgctgtggttacctccccggctcaagccaccat 110
Query: 65 ggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaaggctaa 124
||||||||| |||| ||| | ||||| |||||| | ||||| | |||||||||||| ||
Sbjct: 111 ggtcgctccattcaccggcttgaagtcatccgcttctttcccggtcacccgcaaggccaa 170
Query: 125 caacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgtggcc 184
|||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||
Sbjct: 171 caacgacattacttccatcacaagcaacggaggaagagttagctgcatgaaggtgtggcc 230
Query: 185 tccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgattccga 244
|| || ||||||||||||||||||||||| |||||||| |||||||||| || ||
Sbjct: 231 accaatcggaaagaagaagtttgagactctatcttacctccctgaccttagtgacgttga 290
Query: 245 attggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaattcga 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 291 attggctaaggaagttgactaccttctccgcaacaagtggattccttgtgttgaattcga 350
Query: 305 gttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatggacg 364
||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||
Sbjct: 351 gttggagcacggatttgtgtaccgtgagcacggaaacactcccggatactatgatggacg 410
Query: 365 gtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgttgaa 424
||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 411 atactggacaatgtggaagcttccattgttcggatgcaccgactccgctcaagtgttgaa 470
Query: 425 ggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggattcga 484
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 ggaagttgaagaatgcaagaaggagtaccctggcgccttcattaggatcatcggattcga 530
Query: 485 caacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttcaccg 543
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 531 caacacccgtcaagtccaatgcatcagtttcattgcctacaagcccccaagcttcaccg 589
>At5g38410.1 68418.m04643 ribulose bisphosphate carboxylase small chain 3B /
RuBisCO small subunit 3B (RBCS-3B) (ATS3B) identical to
SP|P10798 Ribulose bisphosphate carboxylase small chain
3B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small
subunit 3B) {Arabidopsis thaliana}
Length = 925
Score = 672 bits (339), Expect = 0.0
Identities = 489/539 (90%)
Strand = Plus / Plus
Query: 5 aatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggccactat 64
||||||||||||||||||||| ||||| || ||||| | || |||||||||||||| ||
Sbjct: 51 aatggcttcctctatgctctcctccgccgctgtggttacatccccggctcaggccaccat 110
Query: 65 ggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaaggctaa 124
||||||||| |||| ||| | ||||| |||||||| ||||| | |||||||||| | ||
Sbjct: 111 ggtcgctccattcaccggcttgaagtcatccgctgcattcccggtcacccgcaagaccaa 170
Query: 125 caacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgtggcc 184
||| ||||| ||||||||| |||||||||| |||||||||| ||||||| ||||||||||
Sbjct: 171 caaggacatcacttccatcgcaagcaacgggggaagagttagctgcatgaaggtgtggcc 230
Query: 185 tccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgattccga 244
|| |||||||||||||||||||||||||| |||||||| |||||||||| || |||
Sbjct: 231 accaattggaaagaagaagtttgagactctatcttacctccctgaccttagtgacgtcga 290
Query: 245 attggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaattcga 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 291 attggctaaggaagttgactaccttctccgcaacaagtggattccttgtgttgaattcga 350
Query: 305 gttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatggacg 364
||| ||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||
Sbjct: 351 gttagagcacggatttgtgtaccgtgagcacggaaacactcccggatactacgatggacg 410
Query: 365 gtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgttgaa 424
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 411 gtactggacaatgtggaagcttccattgttcggatgcaccgactccgctcaagtgttgaa 470
Query: 425 ggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggattcga 484
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 471 ggaagttgaagaatgcaagaaggagtacccgggcgccttcattaggatcatcggattcga 530
Query: 485 caacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttcaccg 543
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct: 531 caacacccgtcaagtccaatgcatcagtttcattgcctacaagcccccaagcttcaccg 589
Score = 36.2 bits (18), Expect = 0.47
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 684 ttctatcggattctcaactgtctgat 709
|||||||||||| |||| ||||||||
Sbjct: 682 ttctatcggattgtcaaatgtctgat 707
>At5g38430.1 68418.m04645 ribulose bisphosphate carboxylase small chain 1B /
RuBisCO small subunit 1B (RBCS-1B) (ATS1B) identical to
SP|P10796 Ribulose bisphosphate carboxylase small chain
1B, chloroplast precursor (EC 4.1.1.39) (RuBisCO small
subunit 1B) {Arabidopsis thaliana}
Length = 747
Score = 668 bits (337), Expect = 0.0
Identities = 487/537 (90%)
Strand = Plus / Plus
Query: 5 aatggcttcctctatgctctcttccgctactatggttgcctctccggctcaggccactat 64
||||||||||||||||||||| || || || ||||| |||| |||||||| ||||| ||
Sbjct: 31 aatggcttcctctatgctctcctctgccgctgtggttacctccccggctcaagccaccat 90
Query: 65 ggtcgctcctttcaacggacttaagtcctccgctgccttcccagccacccgcaaggctaa 124
||||||||| |||| || | ||||| |||||| | ||||| | |||||||||||| ||
Sbjct: 91 ggtcgctccattcactggtttgaagtcatccgcttctttcccggtcacccgcaaggccaa 150
Query: 125 caacgacattacttccatcacaagcaacggcggaagagttaactgcatgcaggtgtggcc 184
||||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||
Sbjct: 151 caacgacattacttccatcacaagcaatgggggaagagttagctgcatgaaggtgtggcc 210
Query: 185 tccgattggaaagaagaagtttgagactctctcttaccttcctgaccttaccgattccga 244
|| || ||||||||||||||||||||||| |||||||| ||||||||||| || |||
Sbjct: 211 accaatcggaaagaagaagtttgagactctatcttacctccctgaccttactgacgtcga 270
Query: 245 attggctaaggaagttgactaccttatccgcaacaagtggattccttgtgttgaattcga 304
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 271 attggctaaggaagttgactaccttctccgcaacaaatggattccttgtgttgaattcga 330
Query: 305 gttggagcacggatttgtgtaccgtgagcacggtaactcacccggatactatgatggacg 364
||||||||||||||||||||||||||||||||| ||| | ||||||||||| ||||||||
Sbjct: 331 gttggagcacggatttgtgtaccgtgagcacggaaacactcccggatactacgatggacg 390
Query: 365 gtactggacaatgtggaagcttcccttgttcggttgcaccgactccgctcaagtgttgaa 424
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 391 gtactggacaatgtggaagcttccattgttcggatgcaccgactccgctcaagtgttgaa 450
Query: 425 ggaagtggaagagtgcaagaaggagtaccccaatgccttcattaggatcatcggattcga 484
|||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 451 ggaagttgaagaatgcaagaaggagtacccgggcgccttcattaggatcatcggattcga 510
Query: 485 caacacccgtcaagtccagtgcatcagtttcattgcctacaagccaccaagcttcac 541
|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct: 511 caacacccgtcaagtccaatgcatcagtttcattgcctacaagcccccaagcttcac 567
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 28,461
Number of Sequences: 29161
Number of extensions: 28461
Number of successful extensions: 691
Number of sequences better than 10.0: 55
length of query: 855
length of database: 44,058,232
effective HSP length: 17
effective length of query: 838
effective length of database: 43,562,495
effective search space: 36505370810
effective search space used: 36505370810
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)