BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.555.Contig1
(1874 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5)... 3663 0.0
At1g07880.1 68414.m00855 mitogen-activated protein kinase, ... 54 4e-06
At5g13290.1 68418.m01526 protein kinase family protein cont... 52 2e-05
At2g30540.1 68415.m03719 glutaredoxin family protein contai... 50 7e-05
At1g23010.1 68414.m02875 multi-copper oxidase type I family... 50 7e-05
>At5g21482.1 68418.m02536 cytokinin oxidase, putative (CKX5) contains Pfam
profile: PF01565 FAD binding domain; identical to
cytokinin oxidase (CKX5) [Arabidopsis thaliana]
gi|11120514|gb|AAG30908; similar to Swiss-Prot:Q9LTS3
cytokinin oxidase 3 precursor (CKO 3)[Arabidopsis
thaliana]
Length = 1848
Score = 3663 bits (1848), Expect = 0.0
Identities = 1848/1848 (100%)
Strand = Plus / Plus
Query: 2 acagacaaacaaaaaaaggtttggttccaaaagctaaaaagcttccatctacattagagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 acagacaaacaaaaaaaggtttggttccaaaagctaaaaagcttccatctacattagagt 60
Query: 62 ctctctatttagcatttacacacaatcacacacacacacacacacacacaccaaaatgat 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ctctctatttagcatttacacacaatcacacacacacacacacacacacaccaaaatgat 120
Query: 122 agcttacatagaaccatacttcttggaaaacgacgccgaggctgcctctgccgccaccgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agcttacatagaaccatacttcttggaaaacgacgccgaggctgcctctgccgccaccgc 180
Query: 182 cgccggaaaatctacggatggtgtttctgagtcacttaacatccaaggagaaatcttatg 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cgccggaaaatctacggatggtgtttctgagtcacttaacatccaaggagaaatcttatg 240
Query: 242 tggtggagctgcggcggatatcgccgggagagattttggcggcatgaactgtgtgaagcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tggtggagctgcggcggatatcgccgggagagattttggcggcatgaactgtgtgaagcc 300
Query: 302 tcttgctgtggtgagaccagtgggaccggaagatatcgccggagcggtgaaagcggctct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tcttgctgtggtgagaccagtgggaccggaagatatcgccggagcggtgaaagcggctct 360
Query: 362 gaggtcagataaactaacggtggcggcgcgtggaaacggccattctatcaacggtcaagc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gaggtcagataaactaacggtggcggcgcgtggaaacggccattctatcaacggtcaagc 420
Query: 422 catggcggaaggaggactcgttgtcgatatgagtaccacggcggagaatcatttcgaggt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 catggcggaaggaggactcgttgtcgatatgagtaccacggcggagaatcatttcgaggt 480
Query: 482 tggttatttatccggcggtgatgccacggcgtttgttgatgtctccggaggggcattatg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tggttatttatccggcggtgatgccacggcgtttgttgatgtctccggaggggcattatg 540
Query: 542 ggaagatgtattgaaacggtgcgtttcggagtacggtttggctccgaggtcttggactga 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ggaagatgtattgaaacggtgcgtttcggagtacggtttggctccgaggtcttggactga 600
Query: 602 ttatcttgggttaacggtgggaggtacgttgtcaaatgccggcgttagtggtcaagcgtt 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttatcttgggttaacggtgggaggtacgttgtcaaatgccggcgttagtggtcaagcgtt 660
Query: 662 ccgttacggaccacagacgtcaaatgtaacggagttggacgtcgttacgggaaatggtga 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ccgttacggaccacagacgtcaaatgtaacggagttggacgtcgttacgggaaatggtga 720
Query: 722 cgtcgttacttgctcggagattgagaattcagagctattcttctctgttttaggtggtct 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 cgtcgttacttgctcggagattgagaattcagagctattcttctctgttttaggtggtct 780
Query: 782 tggtcagtttggtatcatcaccagagctagggttttgctacagccagctcctgatatggt 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 tggtcagtttggtatcatcaccagagctagggttttgctacagccagctcctgatatggt 840
Query: 842 gagatggataagagtagtatacaccgagttcgatgagttcactcaagacgccgagtggct 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gagatggataagagtagtatacaccgagttcgatgagttcactcaagacgccgagtggct 900
Query: 902 agtaagtcagaagaacgagtcatcgttcgattacgtggaaggattcgtgtttgtcaacgg 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 agtaagtcagaagaacgagtcatcgttcgattacgtggaaggattcgtgtttgtcaacgg 960
Query: 962 tgctgacccggttaacggatggccaacagttcccctccacccggaccacgagtttgaccc 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tgctgacccggttaacggatggccaacagttcccctccacccggaccacgagtttgaccc 1020
Query: 1022 gacccgactaccacaatcttgcgggtcggttctttattgcctcgaactcggtcttcacta 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 gacccgactaccacaatcttgcgggtcggttctttattgcctcgaactcggtcttcacta 1080
Query: 1082 cagagactccgattccaactcaaccattgacaagagggtggagagattgatcggacggct 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 cagagactccgattccaactcaaccattgacaagagggtggagagattgatcggacggct 1140
Query: 1142 aagatttaatgaaggattaagattcgaggtagatctgccgtacgttgactttttactacg 1201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1141 aagatttaatgaaggattaagattcgaggtagatctgccgtacgttgactttttactacg 1200
Query: 1202 agtcaaacggtcagaagaaatcgcgaaggagaacggtacgtgggaaacgcctcacccttg 1261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1201 agtcaaacggtcagaagaaatcgcgaaggagaacggtacgtgggaaacgcctcacccttg 1260
Query: 1262 gctcaacctcttcgtgtcgaagcgagacatcggagatttcaatcggacggtgttcaaaga 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1261 gctcaacctcttcgtgtcgaagcgagacatcggagatttcaatcggacggtgttcaaaga 1320
Query: 1322 acttgtcaagaacggagtcaatggtccaatgcttgtgtacccactcttgcgaagcaggtg 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1321 acttgtcaagaacggagtcaatggtccaatgcttgtgtacccactcttgcgaagcaggtg 1380
Query: 1382 ggatgatcggacgtccgtggttataccggaagaaggagagatattctacattgtggcatt 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1381 ggatgatcggacgtccgtggttataccggaagaaggagagatattctacattgtggcatt 1440
Query: 1442 gcttcggttcgtgccgccgtgtgcgaaagtctcttcggtagagaaaatggtagctcaaaa 1501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1441 gcttcggttcgtgccgccgtgtgcgaaagtctcttcggtagagaaaatggtagctcaaaa 1500
Query: 1502 ccaagagatcgttcattggtgtgtcaaaaacggaattgattacaaattgtatcttcctca 1561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1501 ccaagagatcgttcattggtgtgtcaaaaacggaattgattacaaattgtatcttcctca 1560
Query: 1562 ttacaagtctcaagaggaatggattcgccattttggaaaccgatggtcgagatttgttga 1621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1561 ttacaagtctcaagaggaatggattcgccattttggaaaccgatggtcgagatttgttga 1620
Query: 1622 taggaaagctatgtttgatcccatggctatactttcaccgggtcaaaagattttcaatag 1681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1621 taggaaagctatgtttgatcccatggctatactttcaccgggtcaaaagattttcaatag 1680
Query: 1682 gtctctttgacccctcatatttttactttttttacttttcttatttttacttttgtattc 1741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1681 gtctctttgacccctcatatttttactttttttacttttcttatttttacttttgtattc 1740
Query: 1742 ttgagttttgtggtctttatgtaattttttctgtatttttcttttttcccaagaaaaaaa 1801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1741 ttgagttttgtggtctttatgtaattttttctgtatttttcttttttcccaagaaaaaaa 1800
Query: 1802 tcagctggttttttataaaaggtggcctacgagtcatgtccaattatg 1849
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1801 tcagctggttttttataaaaggtggcctacgagtcatgtccaattatg 1848
>At1g07880.1 68414.m00855 mitogen-activated protein kinase, putative / MAPK,
putative (MPK13) mitogen-activated protein kinase
(MAPK)(AtMPK13), PMID:12119167; similar to GB:CAB37188
from [Medicago sativa]
Length = 1407
Score = 54.0 bits (27), Expect = 4e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 93 acacacacacacacacacaccaaaatgatag 123
||||||||||||||||| |||||||||||||
Sbjct: 855 acacacacacacacacaaaccaaaatgatag 825
Score = 34.2 bits (17), Expect = 4.1
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 89 acacacacacacacaca 105
|||||||||||||||||
Sbjct: 855 acacacacacacacaca 839
>At5g13290.1 68418.m01526 protein kinase family protein contains protein kinase
domain, Pfam:PF00069
Length = 1891
Score = 52.0 bits (26), Expect = 2e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 79 acacacaatcacacacacacacacacacacacac 112
||||||| |||||||||||||||||||||||||
Sbjct: 121 acacacacacacacacacacacacacacacacac 88
Score = 52.0 bits (26), Expect = 2e-05
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 79 acacacaatcacacacacacacacacacacacac 112
||||||| |||||||||||||||||||||||||
Sbjct: 119 acacacacacacacacacacacacacacacacac 86
Score = 50.1 bits (25), Expect = 7e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 79 acacacaatcacacacacacacacacacacaca 111
||||||| ||||||||||||||||||||||||
Sbjct: 117 acacacacacacacacacacacacacacacaca 85
>At2g30540.1 68415.m03719 glutaredoxin family protein contains INTERPRO Domain
IPR002109, Glutaredoxin (thioltransferase)
Length = 680
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacacac 112
|||||||||||||||||||||||||
Sbjct: 36 cacacacacacacacacacacacac 60
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacacac 112
|||||||||||||||||||||||||
Sbjct: 32 cacacacacacacacacacacacac 56
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacacac 112
|||||||||||||||||||||||||
Sbjct: 34 cacacacacacacacacacacacac 58
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacaca 111
||||||||||||||||||||||||
Sbjct: 38 cacacacacacacacacacacaca 61
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 acacacacacacacacacacacac 112
||||||||||||||||||||||||
Sbjct: 31 acacacacacacacacacacacac 54
Score = 48.1 bits (24), Expect = 3e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 78 tacacacaatcacacacacacacacacacaca 109
|||||||| ||||||||||||||||||||||
Sbjct: 30 tacacacacacacacacacacacacacacaca 61
>At1g23010.1 68414.m02875 multi-copper oxidase type I family protein similar to
SP|P07788 Spore coat protein A {Bacillus subtilis};
contains Pfam profile PF00394: Multicopper oxidase
Length = 2067
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacacac 112
|||||||||||||||||||||||||
Sbjct: 38 cacacacacacacacacacacacac 62
Score = 50.1 bits (25), Expect = 7e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cacacacacacacacacacacacac 112
|||||||||||||||||||||||||
Sbjct: 40 cacacacacacacacacacacacac 64
Score = 48.1 bits (24), Expect = 3e-04
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 acacacacacacacacacacacac 112
||||||||||||||||||||||||
Sbjct: 37 acacacacacacacacacacacac 60
Score = 40.1 bits (20), Expect = 0.067
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 79 acacacaatcacacacacacacacacac 106
||||||| |||||||||||||||||||
Sbjct: 37 acacacacacacacacacacacacacac 64
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70,494
Number of Sequences: 29161
Number of extensions: 70494
Number of successful extensions: 4768
Number of sequences better than 10.0: 231
length of query: 1874
length of database: 44,058,232
effective HSP length: 18
effective length of query: 1856
effective length of database: 43,533,334
effective search space: 80797867904
effective search space used: 80797867904
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)