BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.5.cl.552.Contig2
(4540 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis ... 117 2e-24
ref|NP_193698.2| heat shock factor protein-related / heat s... 48 0.002
gb|AAM67109.1| putative DNA-binding protein [Arabidopsis th... 47 0.003
ref|NP_177880.1| heat shock transcription factor family pro... 47 0.004
emb|CAB63800.1| heat shock factor 2 [Arabidopsis thaliana] 46 0.009
ref|NP_186949.1| heat shock factor protein 2 (HSF2) / heat ... 45 0.020
ref|NP_193623.1| heat shock transcription factor 21 (HSF21)... 44 0.026
gb|AAC31792.1| heat shock transcription factor 21 [Arabidop... 44 0.026
pir||T06156 hypothetical protein F24J7.180 - Arabidopsis th... 44 0.034
ref|NP_193510.1| heat shock factor protein 1 (HSF1) / heat ... 42 0.13
>pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis
thaliana|gi|3152580|gb|AAC17061.1| Contains similarity to
heat shock transcription factor HSF8 gb|X67600 from
Lycopersicon peruvianum. [Arabidopsis thaliana]
Length = 102
Score = 117 bits (294), Expect = 2e-24
Identities = 68/102 (66%), Positives = 68/102 (66%), Gaps = 33/102 (32%)
Frame = +1
Query: 4087 MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT------- 4245
MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT
Sbjct: 1 MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMY 60
Query: 4246 --------------------------*ELRSQSNENVDMSIL 4293
ELRSQSNENVDMSIL
Sbjct: 61 IYTYKDYISEFGIVSHLVFVVDDWALEELRSQSNENVDMSIL 102
>ref|NP_193698.2| heat shock factor protein-related / heat shock transcription
factor-related [Arabidopsis
thaliana]|gi|22136638|gb|AAM91638.1| unknown protein
[Arabidopsis thaliana]
Length = 131
Score = 47.8 bits (112), Expect = 0.002
Identities = 34/92 (36%), Positives = 47/92 (50%), Gaps = 4/92 (4%)
Frame = +3
Query: 4083 YNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY----IR 4250
Y +V+DP DPIISWSKS+N F++ + R N ++ L Y ++
Sbjct: 17 YKLVEDPSSDPIISWSKSNNGFVMCNEEARIRSKILLRFNCGKLSEFLSELKYYGFTRVK 76
Query: 4251 IKESEQ*ECGHEYFVRGQPELLVKMMFKTGMK 4346
+S + E +E FVRGQPE L MM K K
Sbjct: 77 KTDSGKMEFRNEDFVRGQPERLRDMMLKACRK 108
>gb|AAM67109.1| putative DNA-binding protein [Arabidopsis thaliana]
Length = 125
Score = 47.4 bits (111), Expect = 0.003
Identities = 34/88 (38%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
Frame = +3
Query: 4077 RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 4244
R Y VVDD D IISWS+S+NSFI+ ++R K+ NL+ +L +
Sbjct: 8 RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67
Query: 4245 IRIKESEQ*ECGHEYFVRGQPELLVKMM 4328
I + E GHE FVR + EL+ KM+
Sbjct: 68 IVKGRTGVLEFGHEDFVRDKLELMKKMV 95
>ref|NP_177880.1| heat shock transcription factor family protein [Arabidopsis
thaliana]|gi|25406512|pir||B96805 probable DNA-binding
protein, 53937-54314 [imported] - Arabidopsis
thaliana|gi|12323383|gb|AAG51664.1| putative DNA-binding
protein; 53937-54314 [Arabidopsis thaliana]
Length = 125
Score = 47.0 bits (110), Expect = 0.004
Identities = 33/88 (37%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
Frame = +3
Query: 4077 RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 4244
R Y VVDD D IISWS+S+NSFI+ ++R K+ NL+ +L +
Sbjct: 8 RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67
Query: 4245 IRIKESEQ*ECGHEYFVRGQPELLVKMM 4328
I + E GHE F+R + EL+ KM+
Sbjct: 68 IVKGRTGVLEFGHEDFIRDKLELMKKMV 95
>emb|CAB63800.1| heat shock factor 2 [Arabidopsis thaliana]
Length = 468
Score = 45.8 bits (107), Expect = 0.009
Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 1/82 (1%)
Frame = +3
Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY-IR 4250
++ Y++VDDP D ++SWS +NSF+V F ++F N + + + +TY R
Sbjct: 26 SKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFNHNNFSSFVRQLNTYGFR 85
Query: 4251 IKESEQ*ECGHEYFVRGQPELL 4316
+ ++ E +E F+RGQ ++L
Sbjct: 86 KVDPDRWEFANEGFLRGQKQIL 107
>ref|NP_186949.1| heat shock factor protein 2 (HSF2) / heat shock transcription factor
2 (HSTF2) [Arabidopsis
thaliana]|gi|21431799|sp|Q9SCW5|HSF2_ARATH Heat shock
factor protein 2 (HSF 2) (Heat shock transcription factor
2) (HSTF 2)|gi|6728962|gb|AAF26960.1| putative heat shock
transcription factor [Arabidopsis thaliana]
Length = 468
Score = 44.7 bits (104), Expect = 0.020
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
Frame = +3
Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIW------KRFTEKFCRNR*NLADITWSL*PN 4235
++ Y++VDDP D ++SWS +NSF+V W K+F K+ ++ N + L N
Sbjct: 26 SKTYDMVDDPLTDDVVSWSSGNNSFVV--WNVPEFAKQFLPKYFKHN-NFSSFVRQL--N 80
Query: 4236 STYIRIKESEQ*ECGHEYFVRGQPELL 4316
+ R + ++ E +E F+RGQ ++L
Sbjct: 81 TYGFRKVDPDRWEFANEGFLRGQKQIL 107
>ref|NP_193623.1| heat shock transcription factor 21 (HSF21) [Arabidopsis
thaliana]|gi|7485000|pir||T05025 heat shock transcription
factor homolog F13C5.50 - Arabidopsis
thaliana|gi|2832616|emb|CAA16745.1| heat shock
transcription factor-like protein [Arabidopsis
thaliana]|gi|7268682|emb|CAB78890.1| heat shock
transcription factor-like protein [Arabidopsis
thaliana]|gi|21928153|gb|AAM78104.1| AT4g18880/F13C5_50
[Arabidopsis thaliana]|gi|24111359|gb|AAN46803.1|
At4g18880/F13C5_50 [Arabidopsis thaliana]
Length = 401
Score = 44.3 bits (103), Expect = 0.026
Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
Frame = +3
Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
T+ Y +VDD D I+SWS+S+ SFIV F+ +F ++ N + L N+
Sbjct: 18 TKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHN-NFSSFIRQL--NTY 74
Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELL 4316
R + EQ E ++ FVRGQP L+
Sbjct: 75 GFRKADPEQWEFANDDFVRGQPHLM 99
>gb|AAC31792.1| heat shock transcription factor 21 [Arabidopsis thaliana]
Length = 401
Score = 44.3 bits (103), Expect = 0.026
Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
Frame = +3
Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
T+ Y +VDD D I+SWS+S+ SFIV F+ +F ++ N + L N+
Sbjct: 18 TKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHN-NFSSFIRQL--NTY 74
Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELL 4316
R + EQ E ++ FVRGQP L+
Sbjct: 75 GFRKADPEQWEFANDDFVRGQPHLM 99
>pir||T06156 hypothetical protein F24J7.180 - Arabidopsis
thaliana|gi|2853089|emb|CAA16939.1| putative protein
[Arabidopsis thaliana]|gi|7268759|emb|CAB78965.1|
putative protein [Arabidopsis thaliana]
Length = 145
Score = 43.9 bits (102), Expect = 0.034
Identities = 36/106 (33%), Positives = 49/106 (45%), Gaps = 18/106 (16%)
Frame = +3
Query: 4083 YNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*P---------- 4232
Y +V+DP DPIISWSKS+N F++ + R N ++ L
Sbjct: 17 YKLVEDPSSDPIISWSKSNNGFVMCNEEARIRSKILLRFNCGKLSEFLSELKYYVSFLYI 76
Query: 4233 ------NSTYIRIK--ESEQ*ECGHEYFVRGQPELLVKMMFKTGMK 4346
N + R+K +S + E +E FVRGQPE L MM K K
Sbjct: 77 LRIEFWNHGFTRVKKTDSGKMEFRNEDFVRGQPERLRDMMLKACRK 122
>ref|NP_193510.1| heat shock factor protein 1 (HSF1) / heat shock transcription factor
1 (HSTF1) [Arabidopsis
thaliana]|gi|12644262|sp|P41151|HSF1_ARATH Heat shock
factor protein 1 (HSF 1) (Heat shock transcription factor
1) (HSTF 1)|gi|7428781|pir||S52641 heat shock
transcription factor HSF1 - Arabidopsis
thaliana|gi|2245134|emb|CAB10555.1| heat shock
transcription factor HSF1 [Arabidopsis
thaliana]|gi|7268528|emb|CAB78778.1| heat shock
transcription factor HSF1 [Arabidopsis thaliana]
Length = 495
Score = 42.0 bits (97), Expect = 0.13
Identities = 29/88 (32%), Positives = 49/88 (54%), Gaps = 4/88 (4%)
Frame = +3
Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
++ Y++V+DP D I+SWS ++NSFIV F+ K+ ++ N + L N+
Sbjct: 55 SKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHN-NFSSFVRQL--NTY 111
Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELLVKM 4325
R + ++ E +E F+RGQ LL K+
Sbjct: 112 GFRKVDPDRWEFANEGFLRGQKHLLKKI 139
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 139
effective length of database: 366,266,496
effective search space used: 502883899008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)