BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.5.cl.552.Contig2
         (4540 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||T01033  hypothetical protein YUP8H12R.16 - Arabidopsis ...   117   2e-24
ref|NP_193698.2|  heat shock factor protein-related / heat s...    48   0.002
gb|AAM67109.1|  putative DNA-binding protein [Arabidopsis th...    47   0.003
ref|NP_177880.1|  heat shock transcription factor family pro...    47   0.004
emb|CAB63800.1|  heat shock factor 2 [Arabidopsis thaliana]        46   0.009
ref|NP_186949.1|  heat shock factor protein 2 (HSF2) / heat ...    45   0.020
ref|NP_193623.1|  heat shock transcription factor 21 (HSF21)...    44   0.026
gb|AAC31792.1|  heat shock transcription factor 21 [Arabidop...    44   0.026
pir||T06156  hypothetical protein F24J7.180 - Arabidopsis th...    44   0.034
ref|NP_193510.1|  heat shock factor protein 1 (HSF1) / heat ...    42   0.13 
>pir||T01033 hypothetical protein YUP8H12R.16 - Arabidopsis
            thaliana|gi|3152580|gb|AAC17061.1| Contains similarity to
            heat shock transcription factor HSF8 gb|X67600 from
            Lycopersicon peruvianum. [Arabidopsis thaliana]
          Length = 102

 Score =  117 bits (294), Expect = 2e-24
 Identities = 68/102 (66%), Positives = 68/102 (66%), Gaps = 33/102 (32%)
 Frame = +1

Query: 4087 MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT------- 4245
            MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLT       
Sbjct: 1    MSWMIHNWIQLSRGAKATIASSLESGSASPRSSAEIDRIWQTLLGVYDRTQLTCKFYCMY 60

Query: 4246 --------------------------*ELRSQSNENVDMSIL 4293
                                       ELRSQSNENVDMSIL
Sbjct: 61   IYTYKDYISEFGIVSHLVFVVDDWALEELRSQSNENVDMSIL 102
>ref|NP_193698.2| heat shock factor protein-related / heat shock transcription
            factor-related [Arabidopsis
            thaliana]|gi|22136638|gb|AAM91638.1| unknown protein
            [Arabidopsis thaliana]
          Length = 131

 Score = 47.8 bits (112), Expect = 0.002
 Identities = 34/92 (36%), Positives = 47/92 (50%), Gaps = 4/92 (4%)
 Frame = +3

Query: 4083 YNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY----IR 4250
            Y +V+DP  DPIISWSKS+N F++   +         R N   ++  L     Y    ++
Sbjct: 17   YKLVEDPSSDPIISWSKSNNGFVMCNEEARIRSKILLRFNCGKLSEFLSELKYYGFTRVK 76

Query: 4251 IKESEQ*ECGHEYFVRGQPELLVKMMFKTGMK 4346
              +S + E  +E FVRGQPE L  MM K   K
Sbjct: 77   KTDSGKMEFRNEDFVRGQPERLRDMMLKACRK 108
>gb|AAM67109.1| putative DNA-binding protein [Arabidopsis thaliana]
          Length = 125

 Score = 47.4 bits (111), Expect = 0.003
 Identities = 34/88 (38%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 4077 RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 4244
            R Y VVDD   D IISWS+S+NSFI+      ++R   K+     NL+    +L  +   
Sbjct: 8    RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67

Query: 4245 IRIKESEQ*ECGHEYFVRGQPELLVKMM 4328
            I    +   E GHE FVR + EL+ KM+
Sbjct: 68   IVKGRTGVLEFGHEDFVRDKLELMKKMV 95
>ref|NP_177880.1| heat shock transcription factor family protein [Arabidopsis
            thaliana]|gi|25406512|pir||B96805 probable DNA-binding
            protein, 53937-54314 [imported] - Arabidopsis
            thaliana|gi|12323383|gb|AAG51664.1| putative DNA-binding
            protein; 53937-54314 [Arabidopsis thaliana]
          Length = 125

 Score = 47.0 bits (110), Expect = 0.004
 Identities = 33/88 (37%), Positives = 47/88 (52%), Gaps = 4/88 (4%)
 Frame = +3

Query: 4077 RRYNVVDDP*LDPIISWSKSHNSFIV----GIWKRFTEKFCRNR*NLADITWSL*PNSTY 4244
            R Y VVDD   D IISWS+S+NSFI+      ++R   K+     NL+    +L  +   
Sbjct: 8    RVYEVVDDASTDAIISWSESNNSFIIWNVGEFYRRILPKYVDLGTNLSRFFSNLRSHGFK 67

Query: 4245 IRIKESEQ*ECGHEYFVRGQPELLVKMM 4328
            I    +   E GHE F+R + EL+ KM+
Sbjct: 68   IVKGRTGVLEFGHEDFIRDKLELMKKMV 95
>emb|CAB63800.1| heat shock factor 2 [Arabidopsis thaliana]
          Length = 468

 Score = 45.8 bits (107), Expect = 0.009
 Identities = 26/82 (31%), Positives = 47/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*PNSTY-IR 4250
            ++ Y++VDDP  D ++SWS  +NSF+V     F ++F     N  + +  +   +TY  R
Sbjct: 26   SKTYDMVDDPLTDDVVSWSSGNNSFVVWNVPEFAKQFLPKYFNHNNFSSFVRQLNTYGFR 85

Query: 4251 IKESEQ*ECGHEYFVRGQPELL 4316
              + ++ E  +E F+RGQ ++L
Sbjct: 86   KVDPDRWEFANEGFLRGQKQIL 107
>ref|NP_186949.1| heat shock factor protein 2 (HSF2) / heat shock transcription factor
            2 (HSTF2) [Arabidopsis
            thaliana]|gi|21431799|sp|Q9SCW5|HSF2_ARATH Heat shock
            factor protein 2 (HSF 2) (Heat shock transcription factor
            2) (HSTF 2)|gi|6728962|gb|AAF26960.1| putative heat shock
            transcription factor [Arabidopsis thaliana]
          Length = 468

 Score = 44.7 bits (104), Expect = 0.020
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 6/87 (6%)
 Frame = +3

Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIW------KRFTEKFCRNR*NLADITWSL*PN 4235
            ++ Y++VDDP  D ++SWS  +NSF+V  W      K+F  K+ ++  N +     L  N
Sbjct: 26   SKTYDMVDDPLTDDVVSWSSGNNSFVV--WNVPEFAKQFLPKYFKHN-NFSSFVRQL--N 80

Query: 4236 STYIRIKESEQ*ECGHEYFVRGQPELL 4316
            +   R  + ++ E  +E F+RGQ ++L
Sbjct: 81   TYGFRKVDPDRWEFANEGFLRGQKQIL 107
>ref|NP_193623.1| heat shock transcription factor 21 (HSF21) [Arabidopsis
            thaliana]|gi|7485000|pir||T05025 heat shock transcription
            factor homolog F13C5.50 - Arabidopsis
            thaliana|gi|2832616|emb|CAA16745.1| heat shock
            transcription factor-like protein [Arabidopsis
            thaliana]|gi|7268682|emb|CAB78890.1| heat shock
            transcription factor-like protein [Arabidopsis
            thaliana]|gi|21928153|gb|AAM78104.1| AT4g18880/F13C5_50
            [Arabidopsis thaliana]|gi|24111359|gb|AAN46803.1|
            At4g18880/F13C5_50 [Arabidopsis thaliana]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.026
 Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
 Frame = +3

Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
            T+ Y +VDD   D I+SWS+S+ SFIV     F+     +F ++  N +     L  N+ 
Sbjct: 18   TKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHN-NFSSFIRQL--NTY 74

Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELL 4316
              R  + EQ E  ++ FVRGQP L+
Sbjct: 75   GFRKADPEQWEFANDDFVRGQPHLM 99
>gb|AAC31792.1| heat shock transcription factor 21 [Arabidopsis thaliana]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.026
 Identities = 31/85 (36%), Positives = 46/85 (53%), Gaps = 4/85 (4%)
 Frame = +3

Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
            T+ Y +VDD   D I+SWS+S+ SFIV     F+     +F ++  N +     L  N+ 
Sbjct: 18   TKTYEMVDDSSSDSIVSWSQSNKSFIVWNPPEFSRDLLPRFFKHN-NFSSFIRQL--NTY 74

Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELL 4316
              R  + EQ E  ++ FVRGQP L+
Sbjct: 75   GFRKADPEQWEFANDDFVRGQPHLM 99
>pir||T06156 hypothetical protein F24J7.180 - Arabidopsis
            thaliana|gi|2853089|emb|CAA16939.1| putative protein
            [Arabidopsis thaliana]|gi|7268759|emb|CAB78965.1|
            putative protein [Arabidopsis thaliana]
          Length = 145

 Score = 43.9 bits (102), Expect = 0.034
 Identities = 36/106 (33%), Positives = 49/106 (45%), Gaps = 18/106 (16%)
 Frame = +3

Query: 4083 YNVVDDP*LDPIISWSKSHNSFIVGIWKRFTEKFCRNR*NLADITWSL*P---------- 4232
            Y +V+DP  DPIISWSKS+N F++   +         R N   ++  L            
Sbjct: 17   YKLVEDPSSDPIISWSKSNNGFVMCNEEARIRSKILLRFNCGKLSEFLSELKYYVSFLYI 76

Query: 4233 ------NSTYIRIK--ESEQ*ECGHEYFVRGQPELLVKMMFKTGMK 4346
                  N  + R+K  +S + E  +E FVRGQPE L  MM K   K
Sbjct: 77   LRIEFWNHGFTRVKKTDSGKMEFRNEDFVRGQPERLRDMMLKACRK 122
>ref|NP_193510.1| heat shock factor protein 1 (HSF1) / heat shock transcription factor
            1 (HSTF1) [Arabidopsis
            thaliana]|gi|12644262|sp|P41151|HSF1_ARATH Heat shock
            factor protein 1 (HSF 1) (Heat shock transcription factor
            1) (HSTF 1)|gi|7428781|pir||S52641 heat shock
            transcription factor HSF1 - Arabidopsis
            thaliana|gi|2245134|emb|CAB10555.1| heat shock
            transcription factor HSF1 [Arabidopsis
            thaliana]|gi|7268528|emb|CAB78778.1| heat shock
            transcription factor HSF1 [Arabidopsis thaliana]
          Length = 495

 Score = 42.0 bits (97), Expect = 0.13
 Identities = 29/88 (32%), Positives = 49/88 (54%), Gaps = 4/88 (4%)
 Frame = +3

Query: 4074 TRRYNVVDDP*LDPIISWSKSHNSFIVGIWKRFTE----KFCRNR*NLADITWSL*PNST 4241
            ++ Y++V+DP  D I+SWS ++NSFIV     F+     K+ ++  N +     L  N+ 
Sbjct: 55   SKTYDMVEDPATDAIVSWSPTNNSFIVWDPPEFSRDLLPKYFKHN-NFSSFVRQL--NTY 111

Query: 4242 YIRIKESEQ*ECGHEYFVRGQPELLVKM 4325
              R  + ++ E  +E F+RGQ  LL K+
Sbjct: 112  GFRKVDPDRWEFANEGFLRGQKHLLKKI 139
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 139
effective length of database: 366,266,496
effective search space used: 502883899008
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results