BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AV534380.r
         (123 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAK87933.1|  N-methyl-D-aspartate receptor-associated pro...    32   5.0  

>gb|EAK87933.1| N-methyl-D-aspartate receptor-associated protein, 7 transmembrane
           domain protein [Cryptosporidium parvum]
          Length = 256

 Score = 31.6 bits (70), Expect = 5.0
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = -2

Query: 122 VLLFLVYIIIMLVIPKTHVSF--LSTLTVFVISFY 24
           VL+ L+Y II++ IP+ ++++  L  L V + SFY
Sbjct: 172 VLIVLIYSIILIFIPRNNIAYIILGALGVMIFSFY 206



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 16
effective length of database: 599,388,150
effective search space used: 14385315600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)