BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4895.Contig1
         (179 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

pir||A96701  protein F12A21.3 [imported] - Arabidopsis thali...    44   0.001
ref|NP_564908.1|  ATP-binding region, ATPase-like domain-con...    44   0.001
gb|AAK83586.1|  At1g67840/F12A21_3 [Arabidopsis thaliana]|gi...    33   1.2  
ref|NP_866684.1|  DNA-directed RNA polymerase beta chain [Pi...    31   6.1  

>pir||A96701 protein F12A21.3 [imported] - Arabidopsis
           thaliana|gi|11072033|gb|AAG28912.1| F12A21.3
           [Arabidopsis thaliana]
          Length = 610

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = -1

Query: 179 TRVELWLPAFPAAVSEANEA 120
           TRVELWLPAFPAAVSEANEA
Sbjct: 591 TRVELWLPAFPAAVSEANEA 610



>ref|NP_564908.1| ATP-binding region, ATPase-like domain-containing protein
           [Arabidopsis thaliana]
          Length = 611

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = -1

Query: 179 TRVELWLPAFPAAVSEANEA 120
           TRVELWLPAFPAAVSEANEA
Sbjct: 592 TRVELWLPAFPAAVSEANEA 611



>gb|AAK83586.1| At1g67840/F12A21_3 [Arabidopsis
           thaliana]|gi|21360445|gb|AAM47338.1| At1g67840/F12A21_3
           [Arabidopsis thaliana]
          Length = 457

 Score = 33.5 bits (75), Expect = 1.2
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -3

Query: 177 SCRALAACLPCSSI 136
           SCRALAACLPCSSI
Sbjct: 444 SCRALAACLPCSSI 457



>ref|NP_866684.1| DNA-directed RNA polymerase beta chain [Pirellula sp.
           1]|gi|41017926|sp|Q7URW4|RPOC_RHOBA DNA-directed RNA
           polymerase beta' chain (RNAP beta' subunit)
           (Transcriptase beta' chain) (RNA polymerase beta'
           subunit)|gi|32444226|emb|CAD74223.1| DNA-directed RNA
           polymerase beta chain [Pirellula sp.]
          Length = 1429

 Score = 31.2 bits (69), Expect = 6.1
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 28  STYHKIDYTLASPQIGLETKKIHKEMEMKTYASLASDTAAGKAGS 162
           STY ++DY LA   +GL T+    ++ +  Y  L +D  +G+ G+
Sbjct: 527 STYEEVDYALAQGIVGLHTR---IKLRLPKYQKLKTDDESGEYGA 568



  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 35
effective length of database: 563,377,488
effective search space used: 13521059712
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)