BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4894.Contig1
         (328 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g77440.1  68414.m09018 20S proteasome beta subunit C (PBC...   581   e-165
At1g21720.1  68414.m02719 20S proteasome beta subunit C1 (PB...    74   8e-13
At5g50645.1  68418.m06275 hypothetical protein                     44   7e-04
At5g50540.1  68418.m06259 expressed protein                        44   7e-04
At4g21210.1  68417.m03066 expressed protein contains Pfam do...    44   7e-04
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) identical to
           residues 14-204 of 20S proteasome beta subunit PBC2
           GB:AAC32069 [Arabidopsis thaliana]
          Length = 984

 Score =  581 bits (293), Expect = e-165
 Identities = 305/309 (98%)
 Strand = Plus / Minus

                                                                       
Query: 20  aatctggaacacttggtacgaaattaaaacagaaacaacaaggtacatagaatgatcgag 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 aatctggaacacttggtacgaaattaaaacagaaacaacaaggtacatagaatgatcgag 898

                                                                       
Query: 80  tactggaacaagataacaactgctatttcttcatttccattgaactctatcaatagcaaa 139
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 897 tactggaacaagataacaactgctatttcttcattttcattgaactctatcaatagcaaa 838

                                                                       
Query: 140 taaaacatccgagagaacgaaccacaatatccagtttcagagaaggaacatagctactat 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 837 taaaacatccgagagaacgaaccacaatatccagtttcagagaaggaacatagttactat 778

                                                                       
Query: 200 gggacgagagcttctacataaccgggttaaggagtataccgaacttgaacaaaagcagat 259
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 777 gggacgagagcttctacataaccgggttaaggagtataccgaacttggacaaaagcagat 718

                                                                       
Query: 260 atgtgatatcagatcaatccatccttcccttcaggattctctccttcacctccgttggtg 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 717 atgtgatatcagatcaatccatccttcccttcaggattctctccttcacctcctttggtg 658

                    
Query: 320 ttacaacgt 328
           |||||||||
Sbjct: 657 ttacaacgt 649
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (PRCT) almost
           identical to GB:AAC32069 from [Arabidopsis thaliana],
           EST gb|T76747 comes from this gene; identical to cDNA
           proteasome subunit prct GI:2511567
          Length = 918

 Score = 73.8 bits (37), Expect = 8e-13
 Identities = 52/57 (91%)
 Strand = Plus / Minus

                                                                    
Query: 269 cagatcaatccatccttcccttcaggattctctccttcacctccgttggtgttacaa 325
           |||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||||
Sbjct: 730 cagatcaatccatccttccctttaggatcctctccttaatctctgttggtgttacaa 674
>At5g50645.1 68418.m06275 hypothetical protein
          Length = 342

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 1   tttttttttttttttttttaat 22
           ||||||||||||||||||||||
Sbjct: 122 tttttttttttttttttttaat 143

 Score = 38.2 bits (19), Expect = 0.044
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   ttttttttttttttttttt 19
           |||||||||||||||||||
Sbjct: 121 ttttttttttttttttttt 139
>At5g50540.1 68418.m06259 expressed protein 
          Length = 421

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 1   tttttttttttttttttttaat 22
           ||||||||||||||||||||||
Sbjct: 122 tttttttttttttttttttaat 143

 Score = 38.2 bits (19), Expect = 0.044
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   ttttttttttttttttttt 19
           |||||||||||||||||||
Sbjct: 121 ttttttttttttttttttt 139
>At4g21210.1 68417.m03066 expressed protein contains Pfam domain PF03618:
          Domain of unknown function (DUF299)
          Length = 1421

 Score = 44.1 bits (22), Expect = 7e-04
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 1  tttttttttttttttttttaat 22
          ||||||||||||||||||||||
Sbjct: 46 tttttttttttttttttttaat 25

 Score = 38.2 bits (19), Expect = 0.044
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 1  ttttttttttttttttttt 19
          |||||||||||||||||||
Sbjct: 47 ttttttttttttttttttt 29
  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,814
Number of Sequences: 29161
Number of extensions: 29814
Number of successful extensions: 7724
Number of sequences better than 10.0: 326
length of query: 328
length of database: 44,058,232
effective HSP length: 16
effective length of query: 312
effective length of database: 43,591,656
effective search space: 13600596672
effective search space used: 13600596672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)