BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4894.Contig1
(328 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC... 581 e-165
At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PB... 74 8e-13
At5g50645.1 68418.m06275 hypothetical protein 44 7e-04
At5g50540.1 68418.m06259 expressed protein 44 7e-04
At4g21210.1 68417.m03066 expressed protein contains Pfam do... 44 7e-04
>At1g77440.1 68414.m09018 20S proteasome beta subunit C (PBC2) identical to
residues 14-204 of 20S proteasome beta subunit PBC2
GB:AAC32069 [Arabidopsis thaliana]
Length = 984
Score = 581 bits (293), Expect = e-165
Identities = 305/309 (98%)
Strand = Plus / Minus
Query: 20 aatctggaacacttggtacgaaattaaaacagaaacaacaaggtacatagaatgatcgag 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 aatctggaacacttggtacgaaattaaaacagaaacaacaaggtacatagaatgatcgag 898
Query: 80 tactggaacaagataacaactgctatttcttcatttccattgaactctatcaatagcaaa 139
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 897 tactggaacaagataacaactgctatttcttcattttcattgaactctatcaatagcaaa 838
Query: 140 taaaacatccgagagaacgaaccacaatatccagtttcagagaaggaacatagctactat 199
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 837 taaaacatccgagagaacgaaccacaatatccagtttcagagaaggaacatagttactat 778
Query: 200 gggacgagagcttctacataaccgggttaaggagtataccgaacttgaacaaaagcagat 259
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 777 gggacgagagcttctacataaccgggttaaggagtataccgaacttggacaaaagcagat 718
Query: 260 atgtgatatcagatcaatccatccttcccttcaggattctctccttcacctccgttggtg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 717 atgtgatatcagatcaatccatccttcccttcaggattctctccttcacctcctttggtg 658
Query: 320 ttacaacgt 328
|||||||||
Sbjct: 657 ttacaacgt 649
>At1g21720.1 68414.m02719 20S proteasome beta subunit C1 (PBC1) (PRCT) almost
identical to GB:AAC32069 from [Arabidopsis thaliana],
EST gb|T76747 comes from this gene; identical to cDNA
proteasome subunit prct GI:2511567
Length = 918
Score = 73.8 bits (37), Expect = 8e-13
Identities = 52/57 (91%)
Strand = Plus / Minus
Query: 269 cagatcaatccatccttcccttcaggattctctccttcacctccgttggtgttacaa 325
|||||||||||||||||||||| ||||| |||||||| | ||| |||||||||||||
Sbjct: 730 cagatcaatccatccttccctttaggatcctctccttaatctctgttggtgttacaa 674
>At5g50645.1 68418.m06275 hypothetical protein
Length = 342
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tttttttttttttttttttaat 22
||||||||||||||||||||||
Sbjct: 122 tttttttttttttttttttaat 143
Score = 38.2 bits (19), Expect = 0.044
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 ttttttttttttttttttt 19
|||||||||||||||||||
Sbjct: 121 ttttttttttttttttttt 139
>At5g50540.1 68418.m06259 expressed protein
Length = 421
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tttttttttttttttttttaat 22
||||||||||||||||||||||
Sbjct: 122 tttttttttttttttttttaat 143
Score = 38.2 bits (19), Expect = 0.044
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 ttttttttttttttttttt 19
|||||||||||||||||||
Sbjct: 121 ttttttttttttttttttt 139
>At4g21210.1 68417.m03066 expressed protein contains Pfam domain PF03618:
Domain of unknown function (DUF299)
Length = 1421
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 tttttttttttttttttttaat 22
||||||||||||||||||||||
Sbjct: 46 tttttttttttttttttttaat 25
Score = 38.2 bits (19), Expect = 0.044
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 ttttttttttttttttttt 19
|||||||||||||||||||
Sbjct: 47 ttttttttttttttttttt 29
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 29,814
Number of Sequences: 29161
Number of extensions: 29814
Number of successful extensions: 7724
Number of sequences better than 10.0: 326
length of query: 328
length of database: 44,058,232
effective HSP length: 16
effective length of query: 312
effective length of database: 43,591,656
effective search space: 13600596672
effective search space used: 13600596672
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)