BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4892.Contig1
         (389 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g13550.1  68415.m01494 expressed protein                       720   0.0  
At5g54050.1  68418.m06722 DC1 domain-containing protein            36   0.21 
At5g54040.1  68418.m06721 DC1 domain-containing protein cont...    36   0.21 
At5g54020.1  68418.m06719 expressed protein                        36   0.21 
At5g29624.1  68418.m03640 DC1 domain-containing protein cont...    36   0.21 

>At2g13550.1 68415.m01494 expressed protein 
          Length = 1256

 Score =  720 bits (363), Expect = 0.0
 Identities = 383/387 (98%), Gaps = 2/387 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaattttgatatgtgactcgcttttttttatcttattagaattgcaacgagaacataca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaaattttgatatgtgactcgcttttttttatcttattagaattgcaacgagaacataca 60

                                                                       
Query: 61  agtcgaaaatcatacataagccggcggataaacaaaaatccctagagacaaagaccaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtcgaaaatcatacataagccggcggataaacaaaaatccctagagacaaagaccaaaa 120

                                                                       
Query: 121 ggaggaaaagtaatccctaaaaaccagacatgccaaattaccaagaaaggtaaaaacaac 180
           ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 121 ggaggaaaactaatccctaaaaaccagaca-gccaaattaccaagaaaggtaaaaacaac 179

                                                                       
Query: 181 aagataaactcgcaaaaagaagagatggagaccaaagcactaagctgacctattgttcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 aagataaactcgcaaaaagaagagatggagaccaaagcactaagctgacctattgttcca 239

                                                                       
Query: 241 tagaggttctcactaagatttccaaaagaacacgtgaagcagcaataagactggtaatgc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tagaggttctcactaagatttccaaaagaacacgtgaagcagcaataagactggtaatgc 299

                                                                       
Query: 301 cacaaaattaagacatctttctgaagtcaaaccgccagaaacgaaagcaaagaaccaaat 360
           |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 300 cacaaaattaagacatctttctgaagtcaaaccgccaggaacgaaagc-aagaaccaaat 358

                                      
Query: 361 gatactagagagacaacaatcacacca 387
           |||||||||||||||||||||||||||
Sbjct: 359 gatactagagagacaacaatcacacca 385



>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 1808

 Score = 36.2 bits (18), Expect = 0.21
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 158  ttaccaagaaaggtaaaa 175
            ||||||||||||||||||
Sbjct: 1412 ttaccaagaaaggtaaaa 1429



>At5g54040.1 68418.m06721 DC1 domain-containing protein contains Pfam profile
            PF03107: DC1 domain
          Length = 1791

 Score = 36.2 bits (18), Expect = 0.21
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 158  ttaccaagaaaggtaaaa 175
            ||||||||||||||||||
Sbjct: 1360 ttaccaagaaaggtaaaa 1377



>At5g54020.1 68418.m06719 expressed protein 
          Length = 1671

 Score = 36.2 bits (18), Expect = 0.21
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 158  ttaccaagaaaggtaaaa 175
            ||||||||||||||||||
Sbjct: 1318 ttaccaagaaaggtaaaa 1335



>At5g29624.1 68418.m03640 DC1 domain-containing protein contains Pfam PF03107: DC1
            domain
          Length = 1467

 Score = 36.2 bits (18), Expect = 0.21
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 158  ttaccaagaaaggtaaaa 175
            ||||||||||||||||||
Sbjct: 1354 ttaccaagaaaggtaaaa 1371



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,024
Number of Sequences: 29161
Number of extensions: 14024
Number of successful extensions: 1142
Number of sequences better than 10.0: 32
length of query: 389
length of database: 44,058,232
effective HSP length: 17
effective length of query: 372
effective length of database: 43,562,495
effective search space: 16205248140
effective search space used: 16205248140
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)