BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4891.Contig1
         (298 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30390.1  68417.m04317 expressed protein                       517   e-146
At5g57590.1  68418.m07195 aminotransferase class III family ...    34   0.63 
At5g44040.1  68418.m05389 expressed protein similar to unkno...    32   2.5  
At5g44030.1  68418.m05388 cellulose synthase, catalytic subu...    32   2.5  
At4g36520.1  68417.m05185 trichohyalin-related low similarit...    32   2.5  

>At4g30390.1 68417.m04317 expressed protein
          Length = 782

 Score =  517 bits (261), Expect = e-146
 Identities = 291/299 (97%), Gaps = 2/299 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acgggggagggcttctcaatcaatcagtttgagatgattggtgttccagaggttgaataa 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 acgggggagggcttctcattcaatcagtttgagatgattggtgttccagaggttgaataa 239

                                                                       
Query: 61  aaacaaattgctgaaaaggctcccgtcttcgatttgtatttgggtgttctttgaatccgc 120
           ||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 238 aacgaaattgctgaaaaggctcc-gtcttcgatttgtatttgggtgttctttgaatccgc 180

                                                                       
Query: 121 cgccttcttttcgtcgcaatggaatctgaattttccacgatctatagttggtcgttcaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cgccttcttttcgtcgcaatggaatctgaattttccacgatctatagttggtcgttcaga 120

                                                                       
Query: 181 gacgtttccanaaaaaagcaagagtgcgcaaggggccaatctttcctgacgcttttttcg 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 gacgtttccagaaaaaagcaagagtgcgcaaggggccaatctttcctgacgcttttttcg 60

                                                                      
Query: 241 cgtttgtgtnataaac-cgtaacgcggcgtttgttaaaatcgctaaatctttcgaagtt 298
           ||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 59  cgtttgtgtaataaacgcgtaacgcggcgtttgtaaaaatcgctaaatctttcgaagtt 1



>At5g57590.1 68418.m07195 aminotransferase class III family protein low similarity
            to 7,8-diaminopelargonic acid aminotransferase BioA
            [Mesorhizobium loti] GI:12044306; contains Pfam profile
            PF00202: aminotransferase, class III
          Length = 1657

 Score = 34.2 bits (17), Expect = 0.63
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 139  atggaatctgaattttc 155
            |||||||||||||||||
Sbjct: 1640 atggaatctgaattttc 1656



>At5g44040.1 68418.m05389 expressed protein similar to unknown protein
            (gb|AAD10667.1)
          Length = 2278

 Score = 32.2 bits (16), Expect = 2.5
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                            
Query: 98   atttgggtgttctttg 113
            ||||||||||||||||
Sbjct: 1684 atttgggtgttctttg 1669



>At5g44030.1 68418.m05388 cellulose synthase, catalytic subunit (IRX5) nearly
            identical to cellulose synthase [Arabidopsis thaliana]
            GI:27462651; contains Pfam profile PF03552: Cellulose
            synthase
          Length = 3745

 Score = 32.2 bits (16), Expect = 2.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 98   atttgggtgttctttg 113
            ||||||||||||||||
Sbjct: 3283 atttgggtgttctttg 3298



>At4g36520.1 68417.m05185 trichohyalin-related low similarity to SP|Q07283
            Trichohyalin {Homo sapiens}
          Length = 4203

 Score = 32.2 bits (16), Expect = 2.5
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                            
Query: 68   ttgctgaaaaggctcc 83
            ||||||||||||||||
Sbjct: 1493 ttgctgaaaaggctcc 1508



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7405
Number of Sequences: 29161
Number of extensions: 7405
Number of successful extensions: 538
Number of sequences better than 10.0: 32
length of query: 298
length of database: 44,058,232
effective HSP length: 16
effective length of query: 282
effective length of database: 43,591,656
effective search space: 12292846992
effective search space used: 12292846992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)