BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4889.Contig1
         (402 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50670.2  68416.m05543 U1 small nuclear ribonucleoprotein...   696   0.0  
At5g47700.1  68418.m05889 60S acidic ribosomal protein P1 (R...    36   0.22 
At3g11460.1  68416.m01397 pentatricopeptide (PPR) repeat-con...    36   0.22 
At1g69450.1  68414.m07980 early-responsive to dehydration pr...    36   0.22 
At5g35930.1  68418.m04322 AMP-dependent synthetase and ligas...    34   0.85 

>At3g50670.2 68416.m05543 U1 small nuclear ribonucleoprotein 70 (U1-70k)
          Length = 2424

 Score =  696 bits (351), Expect = 0.0
 Identities = 381/390 (97%), Gaps = 2/390 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    cagaaaaatggatgtattgcagcaaaattcccatttttgaagagnctaataacccacccc 60
            ||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||
Sbjct: 1327 cagaaaaatggatgtattgcagcaaaattaccatttttgaagagtctaataaaccacccc 1268

                                                                        
Query: 61   cttnccnggntatagaaaccttagataactaaaaatgtattaaaaagtgaaccagatcac 120
             || || || ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1267 -ttaccagggtatagaaac-ttagataactaaaaatgtattaaaaagtgaaccagatcac 1210

                                                                        
Query: 121  cttcatagtagcccaagtcccagatactgnatatatatagatgttaagataggaaaagag 180
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1209 cttcatagtagcccaagtcccagatactgaatatatatagatgttaagataggaaaagag 1150

                                                                        
Query: 181  agaagggttttcgataatccaaccttggttgcttgaaaataaagcatttgaatggctttg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1149 agaagggttttcgataatccaaccttggttgcttgaaaataaagcatttgaatggctttg 1090

                                                                        
Query: 241  ggatatgggcagataatattttataagttgcttaccagcaggatgagttgagctcattat 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1089 ggatatgggcagataatattttataagttgcttaccagcaggatgagttgagctcattat 1030

                                                                        
Query: 301  agattcagaaaacaactaattgattaggtaaaccgtgtgcctataaccactatatgatat 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1029 agattcagaaaacaactaattgattaggtaaaccgtgtgcctataaccactatatgatat 970

                                          
Query: 361  atcattgtaaaagtatttgctctctgaagg 390
            ||||||||||||||||||||||||||||||
Sbjct: 969  atcattgtaaaagtatttgctctctgaagg 940



>At5g47700.1 68418.m05889 60S acidic ribosomal protein P1 (RPP1C)
          Length = 675

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 304 ttcagaaaacaactaatt 321
           ||||||||||||||||||
Sbjct: 567 ttcagaaaacaactaatt 550



>At3g11460.1 68416.m01397 pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profile PF01535: PPR repeat
          Length = 1872

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 298 tatagattcagaaaacaa 315
           ||||||||||||||||||
Sbjct: 114 tatagattcagaaaacaa 97



>At1g69450.1 68414.m07980 early-responsive to dehydration protein-related / ERD
            protein-related low similarity to ERD4 protein
            (early-responsive to dehydration stress) [Arabidopsis
            thaliana] GI:15375406; contains Pfam profile PF02714:
            Domain of unknown function DUF221
          Length = 1941

 Score = 36.2 bits (18), Expect = 0.22
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 106  agtgaaccagatcacctt 123
            ||||||||||||||||||
Sbjct: 1146 agtgaaccagatcacctt 1129



>At5g35930.1 68418.m04322 AMP-dependent synthetase and ligase family protein
            similar to iturin A synthetase C [Bacillus subtilis]
            GI:16040972; contains Pfam profile PF00501: AMP-binding
            enzyme
          Length = 3594

 Score = 34.2 bits (17), Expect = 0.85
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 298  tatagattcagaaaaca 314
            |||||||||||||||||
Sbjct: 1033 tatagattcagaaaaca 1017



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,572
Number of Sequences: 29161
Number of extensions: 10572
Number of successful extensions: 769
Number of sequences better than 10.0: 15
length of query: 402
length of database: 44,058,232
effective HSP length: 17
effective length of query: 385
effective length of database: 43,562,495
effective search space: 16771560575
effective search space used: 16771560575
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)