BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4888.Contig1
         (313 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB68394.1|  Rac-like protein [Arabidopsis thaliana]           131   7e-39
sp|P34149|RACC_DICDI  RAS-related protein racC|gi|290043|gb|...    43   6e-06
ref|XP_401384.1|  hypothetical protein UM03769.1 [Ustilago m...    42   2e-04
ref|NP_983659.1|  ACR257Cp [Eremothecium gossypii]|gi|727424...    41   2e-05
dbj|BAA25400.1|  CsCDC42 [Ciona savignyi]                          41   0.005
emb|CAD48472.1|  Cdc42 protein [Ciona intestinalis]                41   0.005
emb|CAD48473.1|  Cdc42 protein [Ciona intestinalis]                41   0.005
ref|NP_982808.1|  ABL139Cp [Eremothecium gossypii]|gi|449807...    41   8e-05
gb|AAA34337.2|  unknown [Candida albicans]|gi|46439909|gb|EA...    41   1e-04
sp|P33153|CRL1_CANAL  GTP-binding RHO-like protein|gi|422071...    41   1e-04
>gb|AAB68394.1| Rac-like protein [Arabidopsis thaliana]
          Length = 269

 Score =  131 bits (329), Expect(2) = 7e-39
 Identities = 64/64 (100%), Positives = 64/64 (100%)
 Frame = +2

Query: 50  MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG 229
           MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG
Sbjct: 1   MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG 60

Query: 230 AVGK 241
           AVGK
Sbjct: 61  AVGK 64

 Score = 50.4 bits (119), Expect(2) = 7e-39
 Identities = 23/24 (95%), Positives = 23/24 (95%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           TSLLISFAENKFPE YVPTVFENY
Sbjct: 65  TSLLISFAENKFPEDYVPTVFENY 88
>sp|P34149|RACC_DICDI RAS-related protein racC|gi|290043|gb|AAC37389.1|
           RacC|gi|12007298|gb|AAG45118.1| RacC [Dictyostelium
           discoideum]|gi|739984|prf||2004273F RacC protein
          Length = 192

 Score = 42.7 bits (99), Expect(2) = 6e-06
 Identities = 17/24 (70%), Positives = 21/24 (86%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LLIS+A N+FPE Y+PTVF+NY
Sbjct: 20  TCLLISYANNRFPEDYIPTVFDNY 43

 Score = 27.7 bits (60), Expect(2) = 6e-06
 Identities = 11/13 (84%), Positives = 13/13 (99%)
 Frame = +2

Query: 203 VKLVVVGDGAVGK 241
           +KLVV+GDGAVGK
Sbjct: 7   IKLVVIGDGAVGK 19
>ref|XP_401384.1| hypothetical protein UM03769.1 [Ustilago maydis
           521]|gi|46099571|gb|EAK84804.1| hypothetical protein
           UM03769.1 [Ustilago maydis 521]
          Length = 640

 Score = 41.6 bits (96), Expect(2) = 2e-04
 Identities = 17/24 (70%), Positives = 21/24 (86%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LLI +++NKFP+ YVPTVFENY
Sbjct: 46  TCLLIVYSQNKFPQEYVPTVFENY 69

 Score = 23.5 bits (49), Expect(2) = 2e-04
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = +2

Query: 206 KLVVVGDGAVGK 241
           KLVVVGDG  GK
Sbjct: 34  KLVVVGDGGCGK 45
>ref|NP_983659.1| ACR257Cp [Eremothecium gossypii]|gi|7274249|gb|AAF44725.1| Rho4
           [Eremothecium gossypii]|gi|44981733|gb|AAS51483.1|
           ACR257Cp [Eremothecium gossypii]
          Length = 259

 Score = 41.2 bits (95), Expect(2) = 2e-05
 Identities = 16/24 (66%), Positives = 21/24 (86%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           TSLL+S+ + +FPE YVPT+FENY
Sbjct: 66  TSLLMSYTQGQFPEDYVPTIFENY 89

 Score = 27.7 bits (60), Expect(2) = 2e-05
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = +2

Query: 200 RVKLVVVGDGAVGK 241
           R+K+VVVGDGA GK
Sbjct: 52  RIKIVVVGDGATGK 65
>dbj|BAA25400.1| CsCDC42 [Ciona savignyi]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LLIS+  NKFP+ YVPTVF+NY
Sbjct: 17  TCLLISYTTNKFPQEYVPTVFDNY 40
>emb|CAD48472.1| Cdc42 protein [Ciona intestinalis]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LLIS+  NKFP+ YVPTVF+NY
Sbjct: 17  TCLLISYTTNKFPQEYVPTVFDNY 40
>emb|CAD48473.1| Cdc42 protein [Ciona intestinalis]
          Length = 191

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 17/24 (70%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LLIS+  NKFP+ YVPTVF+NY
Sbjct: 17  TCLLISYTTNKFPQEYVPTVFDNY 40
>ref|NP_982808.1| ABL139Cp [Eremothecium gossypii]|gi|44980727|gb|AAS50632.1|
           ABL139Cp [Eremothecium gossypii]
          Length = 294

 Score = 40.8 bits (94), Expect(2) = 8e-05
 Identities = 16/24 (66%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           TSLLIS+  N FP+ Y+PTVF+NY
Sbjct: 33  TSLLISYTTNSFPQDYIPTVFDNY 56

 Score = 25.8 bits (55), Expect(2) = 8e-05
 Identities = 10/13 (76%), Positives = 12/13 (91%)
 Frame = +2

Query: 203 VKLVVVGDGAVGK 241
           +K VV+GDGAVGK
Sbjct: 20  IKCVVIGDGAVGK 32
>gb|AAA34337.2| unknown [Candida albicans]|gi|46439909|gb|EAK99221.1| hypothetical
           protein CaO19.3330 [Candida albicans
           SC5314]|gi|46440187|gb|EAK99496.1| hypothetical protein
           CaO19.10840 [Candida albicans SC5314]
          Length = 346

 Score = 40.8 bits (94), Expect(2) = 1e-04
 Identities = 16/24 (66%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LL+++ +NKFP  YVPTVFENY
Sbjct: 89  TCLLLAYTQNKFPSIYVPTVFENY 112

 Score = 25.0 bits (53), Expect(2) = 1e-04
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +2

Query: 194 NQRVKLVVVGDGAVGK 241
           N  +K+VVVGDG  GK
Sbjct: 73  NYNMKIVVVGDGGCGK 88
>sp|P33153|CRL1_CANAL GTP-binding RHO-like protein|gi|422071|pir||D47211 GTP-binding
           protein RHO homolog CRL1 - yeast (Candida albicans)
           (fragment)
          Length = 346

 Score = 40.8 bits (94), Expect(2) = 1e-04
 Identities = 16/24 (66%), Positives = 20/24 (82%)
 Frame = +1

Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
           T LL+++ +NKFP  YVPTVFENY
Sbjct: 89  TCLLLAYTQNKFPSIYVPTVFENY 112

 Score = 25.0 bits (53), Expect(2) = 1e-04
 Identities = 10/16 (62%), Positives = 12/16 (74%)
 Frame = +2

Query: 194 NQRVKLVVVGDGAVGK 241
           N  +K+VVVGDG  GK
Sbjct: 73  NYNMKIVVVGDGGCGK 88
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 79
effective length of database: 479,984,376
effective search space used: 11519625024
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results