BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4888.Contig1
(313 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB68394.1| Rac-like protein [Arabidopsis thaliana] 131 7e-39
sp|P34149|RACC_DICDI RAS-related protein racC|gi|290043|gb|... 43 6e-06
ref|XP_401384.1| hypothetical protein UM03769.1 [Ustilago m... 42 2e-04
ref|NP_983659.1| ACR257Cp [Eremothecium gossypii]|gi|727424... 41 2e-05
dbj|BAA25400.1| CsCDC42 [Ciona savignyi] 41 0.005
emb|CAD48472.1| Cdc42 protein [Ciona intestinalis] 41 0.005
emb|CAD48473.1| Cdc42 protein [Ciona intestinalis] 41 0.005
ref|NP_982808.1| ABL139Cp [Eremothecium gossypii]|gi|449807... 41 8e-05
gb|AAA34337.2| unknown [Candida albicans]|gi|46439909|gb|EA... 41 1e-04
sp|P33153|CRL1_CANAL GTP-binding RHO-like protein|gi|422071... 41 1e-04
>gb|AAB68394.1| Rac-like protein [Arabidopsis thaliana]
Length = 269
Score = 131 bits (329), Expect(2) = 7e-39
Identities = 64/64 (100%), Positives = 64/64 (100%)
Frame = +2
Query: 50 MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG 229
MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG
Sbjct: 1 MADANEVVEWANNLKWDKYAGNKEIVDGLAALRQKITALDGAEGGSGGNQRVKLVVVGDG 60
Query: 230 AVGK 241
AVGK
Sbjct: 61 AVGK 64
Score = 50.4 bits (119), Expect(2) = 7e-39
Identities = 23/24 (95%), Positives = 23/24 (95%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
TSLLISFAENKFPE YVPTVFENY
Sbjct: 65 TSLLISFAENKFPEDYVPTVFENY 88
>sp|P34149|RACC_DICDI RAS-related protein racC|gi|290043|gb|AAC37389.1|
RacC|gi|12007298|gb|AAG45118.1| RacC [Dictyostelium
discoideum]|gi|739984|prf||2004273F RacC protein
Length = 192
Score = 42.7 bits (99), Expect(2) = 6e-06
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LLIS+A N+FPE Y+PTVF+NY
Sbjct: 20 TCLLISYANNRFPEDYIPTVFDNY 43
Score = 27.7 bits (60), Expect(2) = 6e-06
Identities = 11/13 (84%), Positives = 13/13 (99%)
Frame = +2
Query: 203 VKLVVVGDGAVGK 241
+KLVV+GDGAVGK
Sbjct: 7 IKLVVIGDGAVGK 19
>ref|XP_401384.1| hypothetical protein UM03769.1 [Ustilago maydis
521]|gi|46099571|gb|EAK84804.1| hypothetical protein
UM03769.1 [Ustilago maydis 521]
Length = 640
Score = 41.6 bits (96), Expect(2) = 2e-04
Identities = 17/24 (70%), Positives = 21/24 (86%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LLI +++NKFP+ YVPTVFENY
Sbjct: 46 TCLLIVYSQNKFPQEYVPTVFENY 69
Score = 23.5 bits (49), Expect(2) = 2e-04
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +2
Query: 206 KLVVVGDGAVGK 241
KLVVVGDG GK
Sbjct: 34 KLVVVGDGGCGK 45
>ref|NP_983659.1| ACR257Cp [Eremothecium gossypii]|gi|7274249|gb|AAF44725.1| Rho4
[Eremothecium gossypii]|gi|44981733|gb|AAS51483.1|
ACR257Cp [Eremothecium gossypii]
Length = 259
Score = 41.2 bits (95), Expect(2) = 2e-05
Identities = 16/24 (66%), Positives = 21/24 (86%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
TSLL+S+ + +FPE YVPT+FENY
Sbjct: 66 TSLLMSYTQGQFPEDYVPTIFENY 89
Score = 27.7 bits (60), Expect(2) = 2e-05
Identities = 11/14 (78%), Positives = 13/14 (92%)
Frame = +2
Query: 200 RVKLVVVGDGAVGK 241
R+K+VVVGDGA GK
Sbjct: 52 RIKIVVVGDGATGK 65
>dbj|BAA25400.1| CsCDC42 [Ciona savignyi]
Length = 191
Score = 41.2 bits (95), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LLIS+ NKFP+ YVPTVF+NY
Sbjct: 17 TCLLISYTTNKFPQEYVPTVFDNY 40
>emb|CAD48472.1| Cdc42 protein [Ciona intestinalis]
Length = 191
Score = 41.2 bits (95), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LLIS+ NKFP+ YVPTVF+NY
Sbjct: 17 TCLLISYTTNKFPQEYVPTVFDNY 40
>emb|CAD48473.1| Cdc42 protein [Ciona intestinalis]
Length = 191
Score = 41.2 bits (95), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LLIS+ NKFP+ YVPTVF+NY
Sbjct: 17 TCLLISYTTNKFPQEYVPTVFDNY 40
>ref|NP_982808.1| ABL139Cp [Eremothecium gossypii]|gi|44980727|gb|AAS50632.1|
ABL139Cp [Eremothecium gossypii]
Length = 294
Score = 40.8 bits (94), Expect(2) = 8e-05
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
TSLLIS+ N FP+ Y+PTVF+NY
Sbjct: 33 TSLLISYTTNSFPQDYIPTVFDNY 56
Score = 25.8 bits (55), Expect(2) = 8e-05
Identities = 10/13 (76%), Positives = 12/13 (91%)
Frame = +2
Query: 203 VKLVVVGDGAVGK 241
+K VV+GDGAVGK
Sbjct: 20 IKCVVIGDGAVGK 32
>gb|AAA34337.2| unknown [Candida albicans]|gi|46439909|gb|EAK99221.1| hypothetical
protein CaO19.3330 [Candida albicans
SC5314]|gi|46440187|gb|EAK99496.1| hypothetical protein
CaO19.10840 [Candida albicans SC5314]
Length = 346
Score = 40.8 bits (94), Expect(2) = 1e-04
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LL+++ +NKFP YVPTVFENY
Sbjct: 89 TCLLLAYTQNKFPSIYVPTVFENY 112
Score = 25.0 bits (53), Expect(2) = 1e-04
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 194 NQRVKLVVVGDGAVGK 241
N +K+VVVGDG GK
Sbjct: 73 NYNMKIVVVGDGGCGK 88
>sp|P33153|CRL1_CANAL GTP-binding RHO-like protein|gi|422071|pir||D47211 GTP-binding
protein RHO homolog CRL1 - yeast (Candida albicans)
(fragment)
Length = 346
Score = 40.8 bits (94), Expect(2) = 1e-04
Identities = 16/24 (66%), Positives = 20/24 (82%)
Frame = +1
Query: 241 TSLLISFAENKFPEXYVPTVFENY 312
T LL+++ +NKFP YVPTVFENY
Sbjct: 89 TCLLLAYTQNKFPSIYVPTVFENY 112
Score = 25.0 bits (53), Expect(2) = 1e-04
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +2
Query: 194 NQRVKLVVVGDGAVGK 241
N +K+VVVGDG GK
Sbjct: 73 NYNMKIVVVGDGGCGK 88
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 79
effective length of database: 479,984,376
effective search space used: 11519625024
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)