BLASTX 1.5.4-Paracel [2003-06-05]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4885.Contig1
(297 letters)
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
1,895,298 sequences; 629,712,918 total letters
Searching...................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB56150.1| outer surface protein A [Borrelia valaisiana] 32 4.1
gb|AAF00572.1| outer surface protein A precursor [Borrelia ... 31 5.3
>emb|CAB56150.1| outer surface protein A [Borrelia valaisiana]
Length = 273
Score = 31.6 bits (70), Expect = 4.1
Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 7/61 (11%)
Frame = +1
Query: 100 LRQDT--LNRE*NLQGVIGICIRGIAMQHQVSSAWVNSTRTVEISAT-----D*CYXKQN 258
++QDT L +E + G + I + A + + AWV++T T+ ISA D + K+N
Sbjct: 182 VKQDTVTLTKEIDKDGKVKISLEDTASSPKKTGAWVDATNTLTISANNKKTKDLVFTKEN 241
Query: 259 T 261
T
Sbjct: 242 T 242
>gb|AAF00572.1| outer surface protein A precursor [Borrelia
valaisiana]|gi|6006700|gb|AAF00576.1| outer surface
protein A precursor [Borrelia valaisiana]
Length = 273
Score = 31.2 bits (69), Expect = 5.3
Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 7/61 (11%)
Frame = +1
Query: 100 LRQDT--LNRE*NLQGVIGICIRGIAMQHQVSSAWVNSTRTVEISAT-----D*CYXKQN 258
++QDT L +E + G + I + A + + AWV++T T+ ISA D + K+N
Sbjct: 182 VKQDTVTLTKEIDKDGKVKISLDDTASSSKKTGAWVDATNTLTISANSKKTKDLVFTKEN 241
Query: 259 T 261
T
Sbjct: 242 T 242
Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
Posted date: Jul 5, 2004 10:54 PM
Number of letters in database: 629,712,918
Number of sequences in database: 1,895,298
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 74
effective length of database: 489,460,866
effective search space used: 11747060784
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)