BLASTX 1.5.4-Paracel [2003-06-05]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4885.Contig1
         (297 letters)

Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr 
           1,895,298 sequences; 629,712,918 total letters

Searching...................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB56150.1|  outer surface protein A [Borrelia valaisiana]     32   4.1  
gb|AAF00572.1|  outer surface protein A precursor [Borrelia ...    31   5.3  
>emb|CAB56150.1| outer surface protein A [Borrelia valaisiana]
          Length = 273

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 7/61 (11%)
 Frame = +1

Query: 100 LRQDT--LNRE*NLQGVIGICIRGIAMQHQVSSAWVNSTRTVEISAT-----D*CYXKQN 258
           ++QDT  L +E +  G + I +   A   + + AWV++T T+ ISA      D  + K+N
Sbjct: 182 VKQDTVTLTKEIDKDGKVKISLEDTASSPKKTGAWVDATNTLTISANNKKTKDLVFTKEN 241

Query: 259 T 261
           T
Sbjct: 242 T 242
>gb|AAF00572.1| outer surface protein A precursor [Borrelia
           valaisiana]|gi|6006700|gb|AAF00576.1| outer surface
           protein A precursor [Borrelia valaisiana]
          Length = 273

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 20/61 (32%), Positives = 33/61 (53%), Gaps = 7/61 (11%)
 Frame = +1

Query: 100 LRQDT--LNRE*NLQGVIGICIRGIAMQHQVSSAWVNSTRTVEISAT-----D*CYXKQN 258
           ++QDT  L +E +  G + I +   A   + + AWV++T T+ ISA      D  + K+N
Sbjct: 182 VKQDTVTLTKEIDKDGKVKISLDDTASSSKKTGAWVDATNTLTISANSKKTKDLVFTKEN 241

Query: 259 T 261
           T
Sbjct: 242 T 242
  Database: BlastDB/NCBI/blast/db/FASTA/2004_07_04_01_00_0/nr
    Posted date:  Jul 5, 2004 10:54 PM
  Number of letters in database: 629,712,918
  Number of sequences in database:  1,895,298
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
length of database: 629,712,918
effective HSP length: 74
effective length of database: 489,460,866
effective search space used: 11747060784
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)







BLAST Search Results