BLASTN 2.2.3 [Apr-24-2002]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PTA.CL.48.cl.4884.Contig1
         (462 letters)

Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa 
           29,161 sequences; 44,058,232 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02770.1  68418.m00219 expressed protein                       575   e-163
At3g57300.1  68416.m06378 transcriptional activator, putativ...    36   0.25 
At1g71490.1  68414.m08263 pentatricopeptide (PPR) repeat-con...    36   0.25 
At5g11510.1  68418.m01343 myb family transcription factor (M...    34   0.99 
At3g56120.1  68416.m06237 Met-10+ like family protein non-co...    34   0.99 

>At5g02770.1 68418.m00219 expressed protein
          Length = 1622

 Score =  575 bits (290), Expect = e-163
 Identities = 331/338 (97%), Gaps = 5/338 (1%)
 Strand = Plus / Plus

                                                                        
Query: 1    ctcaataaagtttttccgtctttgtagttaggtagtgtgctagcgttttatgagtccctc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738  ctcaataaagtttttccgtctttgtagttaggtagtgtgctagcgttttatgagtccctc 797

                                                                        
Query: 61   tctggctgcttcattctctctttatttctgaattagaagtccatgtgtgtagtatcttta 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798  tctggctgcttcattctctctttatttctgaattagaagtccatgtgtgtagtatcttta 857

                                                                        
Query: 121  ctaagttcggtcgtggagcaatcaccagatgagatcttgagaaaccaataagtaacctat 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858  ctaagttcggtcgtggagcaatcaccagatgagatcttgagaaaccaataagtaacctat 917

                                                                        
Query: 181  agttctgattgtctgaaatgacaattatcaatgtgtttaggacctaggaattctgaagtg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918  agttctgattgtctgaaatgacaattatcaatgtgtttaggacctaggaattctgaagtg 977

                                                                        
Query: 241  gctggtattgatgttttccatgttgcaggttctttggagtggtaagtatagttttgagta 300
            |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||
Sbjct: 978  gctggtattgatgttttccatgttgcaggttc-ttggagtggtaagtatag-tttgatta 1035

                                                  
Query: 301  ataaactttatttccgttttaatantattgggatgtgg 338
            || |||||||||| |||||||||| |||||| ||||||
Sbjct: 1036 at-aactttattt-cgttttaata-tattggaatgtgg 1070



>At3g57300.1 68416.m06378 transcriptional activator, putative similar to
            transcriptional activator SRCAP [Homo sapiens]
            GI:5106572; contains Pfam profiles PF00271: Helicase
            conserved C-terminal domain, PF00176: SNF2 family
            N-terminal domain
          Length = 4774

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 14   ttccgtctttgtagttag 31
            ||||||||||||||||||
Sbjct: 2484 ttccgtctttgtagttag 2467



>At1g71490.1 68414.m08263 pentatricopeptide (PPR) repeat-containing protein
            contains Pfam profile PF01535: PPR repeat
          Length = 3150

 Score = 36.2 bits (18), Expect = 0.25
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 254  ttttccatgttgcaggtt 271
            ||||||||||||||||||
Sbjct: 1203 ttttccatgttgcaggtt 1186



>At5g11510.1 68418.m01343 myb family transcription factor (MYB3R4) contains Pfam
           profile: PF00249 myb-like DNA-binding domain
          Length = 3403

 Score = 34.2 bits (17), Expect = 0.99
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 148 gatgagatcttgagaaa 164
           |||||||||||||||||
Sbjct: 436 gatgagatcttgagaaa 452



>At3g56120.1 68416.m06237 Met-10+ like family protein non-consensus TT donor
            splice site at exon 4 ; contains Pfam profile PF02475:
            Met-10+ like-protein
          Length = 1686

 Score = 34.2 bits (17), Expect = 0.99
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 12   ttttccgtctttgtagt 28
            |||||||||||||||||
Sbjct: 1121 ttttccgtctttgtagt 1105



  Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
    Posted date:  Jun 25, 2004 12:58 PM
  Number of letters in database: 44,058,232
  Number of sequences in database:  29,161
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9743
Number of Sequences: 29161
Number of extensions: 9743
Number of successful extensions: 741
Number of sequences better than 10.0: 19
length of query: 462
length of database: 44,058,232
effective HSP length: 17
effective length of query: 445
effective length of database: 43,562,495
effective search space: 19385310275
effective search space used: 19385310275
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)