BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4883.Contig1
(515 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finge... 825 0.0
At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finge... 825 0.0
At1g48480.1 68414.m05419 leucine-rich repeat transmembrane ... 56 3e-07
At5g47800.1 68418.m05904 phototropic-responsive NPH3 family... 54 1e-06
At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) s... 50 2e-05
>At5g01520.1 68418.m00067 zinc finger (C3HC4-type RING finger) family protein
similar to MTD2 [Medicago truncatula] GI:9294812;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1306
Score = 825 bits (416), Expect = 0.0
Identities = 439/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 68 cgtagccaccatcatactcctctgggtantctgacgccagagtgttgncgaactggatat 127
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 468 cgtagccaccatcatactcctctgggtactctgacgccagagtgttggcgaactggatat 409
Query: 128 cagcttcaagagccttgagtgaatccttgaacgattttcgnattttccgaagnacaaagt 187
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 408 cagcttcaagagccttgagtgaatccttgaacgattttcgcattttccgaagaacaaagt 349
Query: 188 tttgacataaaccaagcttccttccgagtgatagagaaaacagaaccctactagctcctt 247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttgacataaacca-gcttccttccgagtgatagagaaaacagaaccctactagctcctt 290
Query: 248 tgtttattttttttggtcgagatcaccgacagaagcctnaaatatcgcaaaccccctaac 307
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 289 tgtttattttttttggtcgagatcaccgacagaagcctaaaatatcgcaaaccccctaac 230
Query: 308 aacaactcgaattgattctctctcccatttccatggagggttttgagtttttttgctcac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aacaactcgaattgattctctctcccatttccatggagggttttgagtttttttgctcac 170
Query: 368 tcaaccacaaggcagcgacaggaagaagaagaagaaggaggagagagagagagaaagaga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tcaaccacaaggcagcgacaggaagaagaagaagaaggaggagagagagagagaaagaga 110
Query: 428 ggatttagatattgatagattcgcgtagagcanacgtnatatnaaaaatattacaaaagg 487
|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 109 ggatttagatattgatagattcgcgtagagcacacgtaatatcaaaaatattacaaaagg 50
Query: 488 ggaggagcgtctgtctaaagctcttttt 515
||||||||||||||||||||||||||||
Sbjct: 49 ggaggagcgtctgtctaaagctcttttt 22
>At5g01520.2 68418.m00066 zinc finger (C3HC4-type RING finger) family protein
similar to MTD2 [Medicago truncatula] GI:9294812;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 1325
Score = 825 bits (416), Expect = 0.0
Identities = 439/448 (97%), Gaps = 1/448 (0%)
Strand = Plus / Minus
Query: 68 cgtagccaccatcatactcctctgggtantctgacgccagagtgttgncgaactggatat 127
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct: 468 cgtagccaccatcatactcctctgggtactctgacgccagagtgttggcgaactggatat 409
Query: 128 cagcttcaagagccttgagtgaatccttgaacgattttcgnattttccgaagnacaaagt 187
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 408 cagcttcaagagccttgagtgaatccttgaacgattttcgcattttccgaagaacaaagt 349
Query: 188 tttgacataaaccaagcttccttccgagtgatagagaaaacagaaccctactagctcctt 247
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 tttgacataaacca-gcttccttccgagtgatagagaaaacagaaccctactagctcctt 290
Query: 248 tgtttattttttttggtcgagatcaccgacagaagcctnaaatatcgcaaaccccctaac 307
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 289 tgtttattttttttggtcgagatcaccgacagaagcctaaaatatcgcaaaccccctaac 230
Query: 308 aacaactcgaattgattctctctcccatttccatggagggttttgagtttttttgctcac 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 aacaactcgaattgattctctctcccatttccatggagggttttgagtttttttgctcac 170
Query: 368 tcaaccacaaggcagcgacaggaagaagaagaagaaggaggagagagagagagaaagaga 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tcaaccacaaggcagcgacaggaagaagaagaagaaggaggagagagagagagaaagaga 110
Query: 428 ggatttagatattgatagattcgcgtagagcanacgtnatatnaaaaatattacaaaagg 487
|||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 109 ggatttagatattgatagattcgcgtagagcacacgtaatatcaaaaatattacaaaagg 50
Query: 488 ggaggagcgtctgtctaaagctcttttt 515
||||||||||||||||||||||||||||
Sbjct: 49 ggaggagcgtctgtctaaagctcttttt 22
>At1g48480.1 68414.m05419 leucine-rich repeat transmembrane protein kinase,
putative contains similarity to many predicted protein
kinases
Length = 2294
Score = 56.0 bits (28), Expect = 3e-07
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggagagagagagagaaagagag 428
|||||||||||||||| || ||||||||||||| ||||||
Sbjct: 61 gaagaagaagaagaagaagaagagagagagagagagagag 22
Score = 46.1 bits (23), Expect = 3e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggagagagagagagaaagaga 427
|||||||||||||||| || ||||||||||||| |||||
Sbjct: 58 gaagaagaagaagaagaag-agagagagagagagagaga 21
Score = 44.1 bits (22), Expect = 0.001
Identities = 36/38 (94%), Gaps = 2/38 (5%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaag-gag-gagagagagagagaaag 424
|||||||||||||||| ||| |||||||||||||||||
Sbjct: 55 gaagaagaagaagaagagagagagagagagagagaaag 18
>At5g47800.1 68418.m05904 phototropic-responsive NPH3 family protein contains
NPH3 family domain, Pfam:PF03000
Length = 1967
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggagagagagaga 419
||||||||||||||||||| |||||||||||
Sbjct: 58 gaagaagaagaagaaggagaagagagagaga 28
Score = 44.1 bits (22), Expect = 0.001
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggag-agagagagaga 421
|||||||||||||||| ||||| |||||||||||
Sbjct: 61 gaagaagaagaagaagaaggagaagagagagaga 28
Score = 36.2 bits (18), Expect = 0.28
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 387 aggaagaagaagaagaag 404
||||||||||||||||||
Sbjct: 66 aggaagaagaagaagaag 49
>At5g02030.1 68418.m00123 homeodomain protein (BELLRINGER) several homeodomain
proteins;
Length = 2017
Score = 50.1 bits (25), Expect = 2e-05
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggagagagagagaga 421
|||||||||||||||| || |||||||||||||
Sbjct: 93 gaagaagaagaagaagaagaagagagagagaga 61
Score = 40.1 bits (20), Expect = 0.018
Identities = 30/32 (93%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 389 gaagaagaagaagaaggaggagagagagagag 420
|||||||||||||||| || ||||||||||||
Sbjct: 90 gaagaagaagaagaagaag-agagagagagag 60
Score = 32.2 bits (16), Expect = 4.4
Identities = 29/32 (90%), Gaps = 1/32 (3%)
Strand = Plus / Minus
Query: 391 agaagaagaagaaggaggag-agagagagaga 421
|||||||||||||| || || |||||||||||
Sbjct: 94 agaagaagaagaagaagaagaagagagagaga 63
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,237
Number of Sequences: 29161
Number of extensions: 50237
Number of successful extensions: 15674
Number of sequences better than 10.0: 1840
length of query: 515
length of database: 44,058,232
effective HSP length: 17
effective length of query: 498
effective length of database: 43,562,495
effective search space: 21694122510
effective search space used: 21694122510
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 16 (32.2 bits)