BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4882.Contig1
(287 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g21865.1 68416.m02756 expressed protein 507 e-143
At3g53560.1 68416.m05914 chloroplast lumen common family pr... 34 0.60
At3g20720.1 68416.m02622 expressed protein 34 0.60
At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP8... 32 2.4
At5g45580.1 68418.m05600 myb family transcription factor co... 32 2.4
>At3g21865.1 68416.m02756 expressed protein
Length = 1131
Score = 507 bits (256), Expect = e-143
Identities = 279/287 (97%)
Strand = Plus / Plus
Query: 1 gaaagctgaagctaagaatctggacgttcgtgtttaaaacgacgacgtatttgaaattgg 60
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 22 gaaagctgaagctaagaatctggacgttcgtgtttaaaccgacgacgtatttgaaattgg 81
Query: 61 ctttgaaggaaaggtgaaattaatggcggaatcgtcgacgccgtcgcctactgaagagat 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 82 ctttgaaggaaaggtgaaattaatggcggaatcgtcgtcgccgtcgcctactgaagagat 141
Query: 121 cgttcggttgattaagcgtttaagcgcttacgttgctttcaaaaggtcaagcctattctc 180
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct: 142 cgttcggttgattaagcgtttaagcgcttacgttgctttcaaaatgtcaagccttttctc 201
Query: 181 cactacatcgattcgaaatctggattcaagatcaattggtgcgattccggggcttgcaat 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct: 202 cactacatcgattcgaaatctggattcaagatcaattggtgcgattgcggggcttgcgat 261
Query: 241 tccggtgatatttacgtggagggcgataagaacncccggagagcaac 287
| ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 tgcggtgatatttacgtggagggcgataagaacgcccggagagcaac 308
>At3g53560.1 68416.m05914 chloroplast lumen common family protein
Length = 1405
Score = 34.2 bits (17), Expect = 0.60
Identities = 17/17 (100%)
Strand = Plus / Minus
Query: 64 tgaaggaaaggtgaaat 80
|||||||||||||||||
Sbjct: 110 tgaaggaaaggtgaaat 94
>At3g20720.1 68416.m02622 expressed protein
Length = 3693
Score = 34.2 bits (17), Expect = 0.60
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 54 aaattggctttgaagga 70
|||||||||||||||||
Sbjct: 2099 aaattggctttgaagga 2115
>At5g58860.1 68418.m07375 cytochrome P450 86A1 (CYP86) (CYP86A1) / CYPLXXXVI /
P450-dependent fatty acid omega-hydroxylase identical to
Cytochrome P450 86A1 (CYPLXXXVI) (P450-dependent fatty
acid omega-hydroxylase) (SP:P48422) [Arabidopsis
thaliana]
Length = 1779
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Minus
Query: 42 acgacgtatttgaaat 57
||||||||||||||||
Sbjct: 1209 acgacgtatttgaaat 1194
>At5g45580.1 68418.m05600 myb family transcription factor contains Pfam profile:
PF00249 myb-like DNA-binding domain
Length = 927
Score = 32.2 bits (16), Expect = 2.4
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 92 tcgtcgacgccgtcgc 107
||||||||||||||||
Sbjct: 107 tcgtcgacgccgtcgc 122
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7029
Number of Sequences: 29161
Number of extensions: 7029
Number of successful extensions: 518
Number of sequences better than 10.0: 43
length of query: 287
length of database: 44,058,232
effective HSP length: 16
effective length of query: 271
effective length of database: 43,591,656
effective search space: 11813338776
effective search space used: 11813338776
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)