BLASTN 2.2.3 [Apr-24-2002]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PTA.CL.48.cl.4881.Contig1
(281 letters)
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
29,161 sequences; 44,058,232 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydr... 525 e-149
At5g27000.1 68418.m03221 kinesin motor protein-related non-... 38 0.038
At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-pro... 36 0.15
At1g27440.1 68414.m03345 exostosin family protein contains ... 36 0.15
At5g08240.1 68418.m00967 expressed protein 34 0.59
>At2g14170.1 68415.m01578 methylmalonate-semialdehyde dehydrogenase, putative
similar to methylmalonate-semialdehyde dehydrogenase
[acylating], mitochondrial precursor (MMSDH) [Rattus
norvegicus] SWISS-PROT:Q02253
Length = 2195
Score = 525 bits (265), Expect = e-149
Identities = 277/281 (98%)
Strand = Plus / Plus
Query: 1 ctggcaatgccaacgtctcaaaagcaataatgagaccttaacttcaaatacttttttaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1795 ctggcaatgccaacgtctcaaaagcaataatgagaccttaacttcaaatactttttttac 1854
Query: 61 ttttggattatcgaatcagcttcaagaagaaccctttgtttatttttaagctctctagta 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1855 ttttggattatcgaatcagcttcaagaagaaccctttgtttatttttcagctctctagta 1914
Query: 121 tttcctcatgcttagtttccttctttaaatcactatggtgactagaactctagaagtaac 180
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1915 ttttctcatgcttagtttccttcttttaatcactatggtgactagaactctagaagtaac 1974
Query: 181 catgggaataagaaaaagtaaaaatctcaaatttgcctaatttgtcaaataaaaccccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1975 catgggaataagaaaaagtaaaaatctcaaatttgcctaatttgtcaaataaaaccccta 2034
Query: 241 aatgacattctttgagtcgtaaactcataaaagtcaaagtg 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 aatgacattctttgagtcgtaaactcataaaagtcaaagtg 2075
>At5g27000.1 68418.m03221 kinesin motor protein-related non-consensus AT donor
splice site at exon 12; non-consensus AC acceptor splice
site at exon 13
Length = 3194
Score = 38.2 bits (19), Expect = 0.038
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 198 gtaaaaatctcaaatttgc 216
|||||||||||||||||||
Sbjct: 3122 gtaaaaatctcaaatttgc 3140
>At2g45470.1 68415.m05655 fasciclin-like arabinogalactan-protein (FLA8)
Length = 1572
Score = 36.2 bits (18), Expect = 0.15
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 92 ccctttgtttatttttaa 109
||||||||||||||||||
Sbjct: 1345 ccctttgtttatttttaa 1362
>At1g27440.1 68414.m03345 exostosin family protein contains Pfam profile:
PF03016 exostosin family
Length = 1525
Score = 36.2 bits (18), Expect = 0.15
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 80 cttcaagaagaaccctttgttt 101
||||||||| ||||||||||||
Sbjct: 915 cttcaagaacaaccctttgttt 936
>At5g08240.1 68418.m00967 expressed protein
Length = 1372
Score = 34.2 bits (17), Expect = 0.59
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 95 tttgtttatttttaagc 111
|||||||||||||||||
Sbjct: 878 tttgtttatttttaagc 894
Database: ../PTA.blast_byTAIR/DB/ATH1_cdna_cm_20040228.fa
Posted date: Jun 25, 2004 12:58 PM
Number of letters in database: 44,058,232
Number of sequences in database: 29,161
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,193
Number of Sequences: 29161
Number of extensions: 10193
Number of successful extensions: 845
Number of sequences better than 10.0: 79
length of query: 281
length of database: 44,058,232
effective HSP length: 16
effective length of query: 265
effective length of database: 43,591,656
effective search space: 11551788840
effective search space used: 11551788840
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)